Lates calcarifer (barramundi perch): 108875425
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Entry
108875425 CDS
T04895
Name
(RefSeq) neural-cadherin
KO
K27892
neural-cadherin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108875425
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Cadherin related
108875425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
Cadherin_CELSR2_9th
Cadherin_pro
EGF
hEGF
Big_9
EGF_Teneurin
EGF_2
EGF_Hmr-1
EGF_3
Motif
Other DBs
NCBI-GeneID:
108875425
NCBI-ProteinID:
XP_018519889
UniProt:
A0AAJ7LCJ5
LinkDB
All DBs
Position
LG10:18904769..18983473
Genome browser
AA seq
2916 aa
AA seq
DB search
MIWGVLLSCLLTVAAGYQAQERLPFFHGHVFENSPSASKVNGLSIPVRRINAQKWCPVSG
MHFKLYGNGSEDFRAFAHHKRGNILLKTSRVLDREARSEYLLSVGMCCQTSVSESVVFVV
ASVKVDVLDTNDHEPTFRSADTLHITLDDTTALRTVVYRLEAVDADSGRNAELTYVSVPK
NGSFYVVPKTGEVLLVDSILGLPSKVKFSVFARDHGWPPLTSKGVVVTIAPQRWATRPVE
LERSGGVGRSPRALLDPGTVVSLNVSEDASVGSVITSLGPARFQSAAYELIYPESESSPV
TVGRDSGDITITRRLDRETEPFVELTVKIQDKRGPDWYLNKVKLKIIDVNDNVPEWNMKP
YPYLAVVSPEAPAGAFVYQLQAQDGDEGKSGEVEYFLSDGGDGCFAVDKNTGQVVTTGLV
LQRDREYLLSVVALDGLGSRSAPAMLSVMAGARAPQFTNISYAISIPENTPEGQPFLVVF
AISFQKQPISYSLLINPSSLFSIRQETGEISLTRTLDYESDQRRYLLMVRASEEPGSLSA
ATEVQVLITDENDCVPEFLQSIYSVDGVPETVTTATSLLQVLATDCDSGLNAELTYYTLS
PDFSISPHGTVFPAGRLDYERPNHLYEFVVMAVDSGDEPHSGTATVRVRMANVNDEAPEF
SQPVYRTFVSEDAGPNTLVATVLAKDPDGDGIIYSITAGNEEGNFVIDSQKGLIRLRSTP
LPKLQGLEYVLNVTATDDNASGGPHPLSSTARVIVGVDDVNNNKPVFEECQQYREQASVL
ENQPTGTFVLQVHAVDADEGANGKVKYGLMHRDSAMPAFRIHPDTGVIVTARRFDRERQR
EYSITVTATDWAEEPLIGICQLTVQILDQNDNSPKFENLRYEYFLREDTLVGTSFLRVAA
HDDDFGTNAAITYSMSLEQPEYLRVNPVTGWVYVNQPISQRTYITRDIIATDGGNRNTSV
ELAVTITNVKNQPPQWEEESYSVVIPENTARDTPIVTIKATSQLGDPRVTYNLEDGMVPE
TNMPVRFYLSPNREDGSASILVSEPLDYETTPFFSLRVRAQNVAAVPLAAFTTVYVNITD
VNDNVPFFTSSIYEASVTEGAQIGTLVLQVSAHDKDLGLNGEITYSLLSDSSGDHHLFRI
DPKLGIIYTEAVFDREARSSYLLEVQSEDGQESARPGKNKQPNSDTAYVRVFISDVNDNK
PVFAQRLYEVGVDENADVGLAVVTVSANDEDEGANAKLRYQITSGNKGGVFDIEPEVGTI
FIAQPLDYEQQKRYKLLVLASDGKWEDYAAVVVTVVNKNDEAPVFSMNEYYGSVTEELDG
SPVFVLQVTATDPDKDADQGAIRYSIHGQGAESHFMINDITGEMYAQRTMDREERAVWRF
VVMATDEEGEGLTGFTDVIINVWDINDNAPTFSCAPDNCHSSVAENSPPGAFVVEMTAVD
LDDAAVGQNAILTYRITENARNANSADLFTIDSSTGTISVAAEGLDREFADTHRLVVEAR
DGGGMTGTATATIVVTDINDHVPKFREDWCGARVPESTNEDAAVLELSAVDPDAGTYGQL
TFSVVAGDPEQQFYMVSHRLDQTGTLRLKQKLDFEKPGKQRFNLTVKVEDSDFSSLIHCL
VQVEDENDNAPVFAPSSHLLSPVPEDITVSTSVIQVVATDSDSGLNGDILYSILPQSDPY
GHFTVSRAGVVTVARPLDRETVAGYELVVMATDRGTPALTGSVTVHLPLLDMNDNGPELE
TAYTPVLWENSPAPQVVWLNRSSTLLHVVDRDSPEHGPPFFLSLPSRYSVDFHLQDHGNS
SATLTALRRFDRERQSEFHLPVIMIDSGNPPMTATNTLTITIGDQNDNAHQAGEKDVYVH
SRKGRMENAALGKVYAPDPDDWDNKTYTLETSAAKYFSLNQSSGVLTVRQNAPAGSYWLR
VGVSDGVWPDVMSGVRVHVRELEEKAIQSSGSLRLAGITARDFIDSHVEGKSRLETFWDF
LSETLSVRPGSINIFSIADREEKTVDIHFYVLTDNGYLRPEKLHAVLAAHKKKLQSLLRV
NVSQVQVDECVHTDCKASGGCSTQLSISDSPTLVDSGAFSLVSVKVTSSAVCGCAAREMT
HRPCSSYPTNPCLNGGTCIDTQDGYRCHCPPQLEGPDCQQTRLSFLGNGYAWFPPIRPCF
DSHLSLEFMTEEEDGLLLYAGPLATLLPGDSEDYMAIELIGGTPSLKINHGSGTLVLQLT
NNGGVADRRWHRLDVRSNSKEVRFTLDRCSSAIVMETEGVDSWAMTEDRSSCEIRGVTPN
RDKYLNGSHVLQLGGVSKNISYEYPQLQHKHYTGCMRNLLVDSKLYDLGSPAESSNTVPG
CSLIDDQCSNMEHLPSCGKRGRCHSEWGSFSCLCEPGFTGPQCDQGKHIELFSFDGRSHI
QFQLSWSLPARQTRLQVGVRSRAATGVILSLLSQEQNEYLRLEVIQGLLAVFYNLGDGDY
NITLPYHRLDDGAWHEVELDRYGREFTLLLDGGGGRREVTASPGRSQEIIIDPSVVMIGN
SFPSGHNRSFLGCLRDVRFNGHSIPLDREQPSEGLQVVTSQGVSVGCSSDACRKHHCSPP
LVCVDLWRQHECRCPPGHLTKESSLGKVCVYTLCASRPCRHGTCVAHSPSRYSCQCSEGY
RGRHCEVTLAMFHNEDSNSLSLSSMFAISICVMAFLVLMLGLFLYSCWRRHKGLKEGVYH
VSAHHGEWEDIRENVLNYDEEGGGEQDQNAFNMVELQRSLQPSPAQSLRYSYPRSIISYP
QTKLPQDNDKKGVSNGNGSAAIALRLAIPPSESETLPSPLTFRRSQKTLSFSSQDLARYL
CEVIRDMEHPGELGSMTTPRRPSGKERGLAAVRSLSSLSASQGSEVRLQGAQSTRLDRFK
TLRAVVCDLRGESKTPEGQRDKLKESRGQLNCEKSG
NT seq
8751 nt
NT seq
+upstream
nt +downstream
nt
atgatttggggtgttttgttaagctgccttctgacggtggctgctggatatcaagcacag
gagcgattgcctttctttcacgggcatgtttttgagaactcgccatcggcatctaaagta
aacggactgagcattccggtgaggcgcatcaacgcgcaaaaatggtgcccagtctccggg
atgcacttcaaactgtacggaaacggcagcgaagatttccgcgccttcgcccaccacaag
cggggaaacattttactgaaaacttccagggttttagacagagaggctcgctcagaatac
ctgctgagcgtgggtatgtgctgccagaccagcgtgtcggagtccgtcgtcttcgtggtt
gcgtcggtgaaagtggatgttttggacaccaacgaccacgaaccgacttttcgcagtgca
gacaccctccacataactttagacgacaccaccgctctccgtactgtggtgtacaggctg
gaggctgttgatgcagacagcggcaggaacgcagagttgacttacgtttctgtccctaaa
aatggcagtttttacgttgtcccgaagacgggcgaagttttgctggttgattctatcctg
gggctcccctctaaagtcaaattcagtgtttttgccagagaccacggctggccccctctg
accagtaaaggtgttgtggttactattgctccacagcggtgggcgacgcgtccggtcgaa
ttagagcggtcaggaggggtgggacggtcgccgagggcattacttgaccccggcaccgtg
gtttccctcaacgtgtctgaagatgccagcgtcggctcggtcataacgagcctgggtccc
gccaggtttcagtcagccgcctacgagttgatttacccggagtcagagagctctccggtc
accgtggggcgcgacagtggagatatcacaataaccaggaggctggatagggagacagag
cccttcgtggagctcactgtaaagattcaggacaaacgaggcccagactggtacctgaac
aaggtgaagctgaagatcattgatgtcaatgacaacgtccctgaatggaatatgaagccg
tacccttacctggctgtagtgtcccctgaggcccctgcgggagcatttgtctaccagctc
caggctcaggatggggatgagggcaaaagcggagaggtggaatactttctgtccgatggc
ggtgacggctgctttgcggtggacaagaacacaggccaggtggtgaccacagggctggtg
cttcagagggacagagagtacttgttaagcgtggtggcccttgacggcctgggcagccgc
agtgcccctgccatgctctctgtgatggcaggagccagagcgccgcaattcaccaatatt
agctacgccatctccataccagagaacacgcctgaaggacagcccttcctggtggtgttt
gccatttcgttccagaagcagccaatcagctacagcctgctgatcaatcccagtagcctt
ttcagcatccgacaggagacaggggagatcagtctgaccaggacgctggattatgagagt
gaccagcgacgctacctgctgatggtgcgagccagcgaggagcctggcagcctcagcgct
gccacagaggttcaggtgttgataacggacgagaatgattgcgtcccagagttcctccaa
tccatctacagtgtcgatggagtccctgagactgtaaccacggcaacgtctctgctgcag
gtgttggccacggactgcgactcggggttaaatgctgagctcacctattacaccctgagc
ccggacttcagcatttcgccccatgggaccgttttcccagcgggccggctggactatgag
aggcccaatcatctgtatgaatttgtggtgatggcagtggacagcggggatgagcctcat
tccggcactgccacggtccgcgtgaggatggcaaacgtcaatgatgaagcccctgaattc
tcccagcctgtataccgaacgtttgtctctgaggatgcgggccccaacaccctcgtcgcc
acagttctggccaaagacccagacggcgatggtataatctactccataacagcaggcaat
gaggaaggaaacttcgtcattgacagccagaaagggctgatccgtctgcgctccactccc
ctacccaagcttcaagggctggagtatgtcctgaatgtaacagctacagatgacaatgca
tcgggtggaccgcaccccctctcctccaccgcccgagtcatcgttggggttgacgatgtc
aacaacaacaaacctgtatttgaggagtgccagcaatatcgtgagcaggcttcagtgctg
gagaaccagccgacggggacttttgtgttgcaagtgcatgccgtggatgcagatgaggga
gcaaatggaaaagtcaaatatggcttaatgcacagagacagtgccatgcctgccttcaga
attcatccagacacaggagtgattgtgacagccaggcggttcgacagggagcggcagaga
gagtattcaattacagtaacggccactgattgggcagaggagcccctcatcggcatctgt
cagctcactgtccaaatactggaccagaatgataatagccccaagtttgagaatctgcgc
tatgagtactttctgagagaagacactttggttggtaccagcttccttcgtgtagcagct
catgatgacgactttggcactaatgcagctatcacttactccatgtccctggagcagcct
gagtacctgcgggtcaaccctgtcactggatgggtctacgttaaccagcccatatcacag
aggacttacattacacgagacatcatagcaactgacgggggaaaccgaaacacttctgtg
gagctggcagtcaccatcaccaacgtaaagaaccagcctccacaatgggaagaggagagc
tacagtgttgtcatcccggagaacactgccagggacacacccatagtgacaatcaaggcg
acctctcagctgggtgacccgagggtgacctacaacctggaggatgggatggtccctgaa
accaatatgcctgttcgtttctacctgtcccccaaccgtgaagatggctctgcatccatt
ctggtgtccgagccattggactatgagaccacaccctttttctctctccgggtccgagca
cagaacgtggctgcagttcctcttgccgcattcaccacagtttatgtcaatattacagat
gtcaatgacaatgtgccatttttcacctcctccatatatgaggcctcagtaacagaagga
gcccagatagggactttggttctccaagtgtctgcccatgacaaggacctgggccttaat
ggagagatcacttactctctgctgagtgacagcagtggcgaccaccatctgttccgcatt
gacccaaaacttgggatcatctacacagaagctgtgtttgatcgtgaagcccgcagctcc
tatttgttggaggttcagtcagaggatggccaggagtcagcacgacctggcaaaaacaaa
cagccaaactcagacacagcgtatgtgagggttttcatcagcgacgtcaacgacaacaaa
ccggtctttgctcagcgactgtatgaagtcggtgttgacgagaatgcagatgtgggcctg
gctgttgtcaccgttagtgctaatgatgaggatgaaggggccaatgccaagctgcgctac
cagataacatctggcaacaaaggtggtgtttttgacatcgagccagaggtggggaccatc
tttattgcgcagccactggactatgagcagcagaaaagatacaagctgctggtccttgcc
tctgatgggaagtgggaagactatgcagccgtggtggttactgtggttaataagaatgac
gaggcaccagtgttctccatgaatgagtactatggatctgtcacagaggaacttgatggg
tcacctgtgtttgtactgcaggtgacagctactgatccagacaaggatgcagaccaaggt
gccatacggtattccattcatggccaaggggccgagtcacacttcatgatcaatgacatc
acgggggagatgtatgcccagcgcaccatggatcgagaagagcgtgctgtctggcgcttt
gttgtcatggcaacggacgaagagggagaggggctaactggctttacagacgttattatt
aacgtgtgggacatcaatgacaatgcccccaccttctcctgtgcccctgataattgccac
agtagcgtggcagagaactccccccctggagcatttgttgtggaaatgacggcggtagac
cttgatgacgcagctgtaggtcagaacgcaatcctcacctacaggattactgagaatgca
cgcaacgcaaacagtgcagacctcttcactatcgattccagcactggcaccatatctgta
gctgcagagggtctggaccgggagtttgctgacacccaccggcttgtagtggaggcccgg
gatggtgggggtatgacaggtacagccactgccactatagtcgtaacagacatcaacgac
catgttccaaagtttagagaggactggtgtggtgctcgtgtgccagagagcactaatgaa
gatgccgctgttctggagttgagcgctgtggaccctgatgctggcacatatggacagctg
accttcagtgtggtggctggagacccagagcagcaattctacatggtcagccacagactg
gaccagacgggcactctgcgactgaagcagaagctggactttgagaaaccagggaagcaa
cggtttaatcttactgttaaggtagaggactccgacttctctagcctcatccactgtctg
gtccaagtggaggatgagaacgataatgcccctgtgtttgccccgagctcccacctgctc
tctcctgtgcccgaggacataactgtaagcaccagtgtcattcaggtcgtggccactgac
tctgactcaggtctgaatggggacattttgtacagcattctcccccagtctgacccatat
ggacattttacagtcagccgagctggtgtggtcacagttgccaggccgctggatagggag
acagtggcaggttatgaactggtcgtcatggcgacagaccggggtaccccggcactgact
ggcagtgtcacggtccacttgcctctgctagacatgaatgacaacgggccagagctggag
actgcctacactcctgtgctgtgggagaacagtccagcacctcaagtggtctggctcaac
aggagctcaactttgcttcacgttgtggacagagactccccagagcatggacctcctttc
tttctctccctgccctcacgttactctgttgacttccacctacaggatcatgggaacagc
tctgccacactcactgccctgcggagatttgacagggagaggcagagtgagttccacttg
ccagtgattatgattgacagcggcaatccgccaatgacagccacaaacaccctcacaatc
accatcggtgaccagaatgataatgcccatcaggcaggagagaaagatgtctatgtgcat
agccgcaagggaaggatggaaaatgcagcactggggaaggtgtatgccccagatcctgat
gactgggacaacaagacctacactctggagacaagcgcagccaaatacttcagcttgaac
cagagctcaggagtgctgactgtccgacagaacgctccagcaggcagctactggttgagg
gtcggggtgtctgatggggtgtggcccgatgtgatgtccggtgtcagagttcatgtcagg
gagctagaggaaaaggccatccagtcgtccggctcgctgcgtttggcaggcattacagcg
agagattttatcgactctcacgtcgaggggaagagtcggctggagacgttctgggacttc
ctgtcagaaaccctgtccgtcaggccggggagtatcaacattttcagcatagcagacaga
gaggagaaaacagtggacattcatttttatgtgctaactgataatggctacctgcgacca
gagaaactgcacgctgtcctcgccgcacataaaaagaagctgcagtcactgctgcgtgta
aatgtgagccaggtgcaggtggatgagtgtgtgcacacagactgcaaggcatccggcggc
tgctccacgcagttaagcatcagtgactcgcccaccctggtagactcaggtgctttttca
ctggtctcagtgaaggtgacatcctcggccgtgtgtggctgcgctgccagagaaatgacc
caccggccctgctcctcctaccccactaacccctgccttaatggggggacctgcatcgac
acccaggatggatacaggtgccactgccccccacagcttgaggggccagactgtcagcag
acgaggctgagtttccttggcaacggctatgcctggtttccccccataaggccatgcttt
gatagccatctttcgctggagtttatgacagaggaagaagatgggttgcttctgtatgcc
ggcccgttagccactctcctgcctggggattctgaggactacatggccatagagctgatt
ggtgggacacccagtctgaaaattaaccacggctctgggaccctggtcctccagttaaca
aataacggcggggtcgctgacagacgctggcatcgccttgatgtgaggagcaacagtaaa
gaagtgcgcttcactctcgatcgatgttccagcgcaattgtcatggagacagaaggcgtg
gactcatgggcaatgacagaggaccgctcatcctgtgaaatccgaggggtcacacccaac
agggacaagtatctgaatggaagtcatgtattgcagctgggaggggtcagtaagaacata
tcatatgaatacccacagctgcagcacaaacactatactggatgtatgagaaacctgctt
gtggacagcaagctatatgaccttggttccccagctgaatcctccaacactgtgccaggc
tgttctcttattgatgaccaatgcagcaacatggagcaccttccctcctgtggcaagagg
ggtcgctgtcacagcgagtggggctccttcagctgcctctgtgaaccagggtttacaggg
ccacagtgtgatcaaggtaaacatatagaattattctcctttgacggccgcagtcacatc
cagttccagctgtcgtggtctcttcccgcgcgacagacgaggcttcaggttggggtgagg
tcgcgtgccgccaccggtgtcatcctcagtctgctctctcaggagcagaatgaataccta
cgtttagaggttatccagggtctcctggccgttttttacaacctcggtgatggagactac
aacatcacactgccctaccatcgccttgatgatggagcctggcatgaggtggagctggat
cggtacggcagagagttcaccctgctcctggacggtggtggaggacggcgagaggttaca
gcctcgcctgggcggagtcaggaaatcattattgacccctcagtggtgatgattggaaac
tcctttccctcgggacacaaccggagcttcctcggctgtttgcgagacgtgaggtttaat
ggccactccatccccctggacagagagcagccttcagaggggcttcaggtggtcacttcg
caaggtgtctctgtcggctgctcctcagatgcctgcaggaaacatcactgctctcctcct
ttggtctgtgtggacctctggagacagcatgagtgcaggtgccctccaggccacctgacc
aaagagagctccttgggcaaagtgtgcgtctacacgctgtgcgccagccggccgtgtcgc
cacggcacctgtgtggctcactccccgtcccgctactcgtgccagtgcagtgagggctac
cggggacggcactgtgaggtgacactcgccatgttccacaacgaggacagcaacagcctc
agcctcagctccatgttcgccatcagcatctgtgtcatggcctttctagtgttgatgctg
ggcctgtttctctactcctgctggaggaggcacaagggcctgaaggagggcgtgtatcac
gtgtctgcacaccatggcgagtgggaggacatccgggagaatgtgctcaattacgacgag
gaaggtggaggagagcaggaccagaatgcctttaatatggtggagctgcagcgctccctc
cagcccagcccggctcagtcactccgctacagctatccacgcagcatcatctcctaccca
cagactaagctcccccaggacaacgacaagaagggggtgtctaatgggaatggcagtgca
gctatcgccctgcgcctggccatccccccctcagagtcagaaaccctgccgtcccctctg
acctttcgccgctcccagaaaaccctctccttctccagccaggacttagcccgctacctg
tgtgaggtcatcagggacatggagcacccgggggagctcggctccatgaccacgccgcgc
cgtccctccggaaaggagcgcggcctggcggcagtgcgctccctcagctctctcagtgca
tctcagggttcagaggtcaggctccagggggcccagagcacacggctggacaggttcaaa
accctccgagctgtggtttgtgatttgagaggagaatccaagactccggagggccagaga
gacaaactgaaggagagcagagggcagctgaactgcgagaagagtgggtga
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integrated database retrieval system
