Lates calcarifer (barramundi perch): 108875432
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Entry
108875432 CDS
T04895
Name
(RefSeq) recQ-like DNA helicase BLM isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03440
Homologous recombination
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108875432
03460 Fanconi anemia pathway
108875432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcf03032
]
108875432
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108875432
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108875432
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
108875432
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
108875432
Bloom's syndrome complex (BTR)
108875432
FA (Fanconi anemia) pathway
108875432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BLM_N
DEAD
BDHCT
Helicase_C
RecQ_Zn_bind
HRDC
RQC
Motif
Other DBs
NCBI-GeneID:
108875432
NCBI-ProteinID:
XP_018519910
UniProt:
A0AAJ7PE31
LinkDB
All DBs
Position
LG10:complement(12701087..12708634)
Genome browser
AA seq
1413 aa
AA seq
DB search
MSSVPQNNLKEQLARHSNAAQSKLSLSKPKPGAFSFKKKSSMGTTKVEVPTKVISSNVLA
NRNVNVPKSSLVTKSPLTFSNKIERPQKSKINSFFPVSSKGKSDSISPARNCAPAGQTPS
AGFDAKAKVATTPTDSQFTSRYSTSTSLDASLGFPLDNWDDLDDFETPAKTKNDSFGSEV
PGNSSKLDASVMTPDLSNCFSNKSGLSRSEKSCKGTDELEQSDNKAAVSPEPSFNQDPEE
LFLDSSPIRMPRRRPHAHLKPVTSDSEEENDAVSEPFEESTVDKKKLIDPKVIEVGDQSE
PEDDLDYIPPSPIPDVISNTTSILETRSKSAGTESRDSQVYSKGPTTTQHEPSVQHSKDK
TNEQLFHIMESICSLVDCIPEHELIALSCGNELLLKRAQRKRILAVGGDALFKMQQPDST
VISEPSSKEKSSLSCDTSSVMSCSGSVPVNSKEALQIRRSSIISLDYDSDPSDSITNVKP
LHSKDSGKLYEENKSICDSPSACSLTKPSFNFSKKTSTDVDDSDLFFSPKKSETVSQNKS
NTPATTTATEGIEPDDFYFDDFDIDDFNDSDIPDYFDEPSTSSVSAQKSSTVKEGGPSKS
SWEKKPTTPVSAPKPSKICSPEPTFRNPAHDRFRGFNFPHSQEMMKIFHKRFGLHQFRFN
QLEAINAALLGEDTFVLMPTGGGKSLCYQLPACVSPGVTVVISPLKSLIVDQVQKLTTLD
IPATSLSGDKSDSEAGRIYMQLSRKDPIIKLLYVTPEKVSASNKLISALQNLYERGLLAR
FVIDEAHCVSQWGHDFRPDYKRLHELRQKFPNVRMMALTATATPRVQKDILNQLNMTRPQ
VFTMSFNRTNLKYAVLPKKPKKVDEDCISWIKKHYPRDSGIVYCLSRNDCDAMAESLQRA
GILALSYHAGLSDGDREYVQNKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSVE
GYYQESGRAGRDGEISHCILFYSYTDVHRIKRIISMDREGDRHTKETHYNNLHSMVHFCE
NMMECRRIQLLAYFGEFKFNKGFCKDHPDVTCDNCSKPNQYKLRNVTEDVKKIVRFVQEN
CEKVGARFGRTAQQNRLTLNMLVDIFLGTKSAKVQSGMFGMGGAYSRHNADRLFKKLVLD
KVLVEDLYITVNGQAVAYISAGPKAMNVLSGHMQVEFYETESASTIRKNKAAVAKNVSQR
EEMVQQCLKELTDLCKQLGKAFGIHYYNIFSTATLKKIAEKLSSDPEVLLQIDGVTEDKL
DKYGAEVIQVLQKYSEWQLPVGEQTDSGNDGWIDTTRGRANIDYDDDDDDTESSTYFRNE
PAQGQKRKKAPFFKYAKKRKGYGNASSNSKGRGYSSNKSWSSSSFRGGSKAAGRGSRSSA
GDASAGRRPGFLAAPTPQTNQRPFLKPTFSHLS
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtgttccacaaaataacctgaaggagcagctggcgaggcacagcaatgctgct
cagagcaagttgtctctgtctaaacccaaaccgggggccttttctttcaagaagaagtcc
tcaatgggtacaacaaaggtggaagtcccaaccaaggtaatcagctcaaatgttttggca
aacaggaatgtcaatgtccctaagagcagtttggtgactaaatctcctttgacattttca
aacaagattgagagacctcaaaagtccaaaatcaacagcttcttccctgtaagttcaaaa
ggcaagtcagactccatcagcccagcacgtaactgtgctcctgcaggccagactccttca
gcagggtttgatgcgaaggctaaggtggccacaactccaactgacagccaattcactagc
agatacagcacctccacaagtctggatgcatcacttggattcccactggacaactgggat
gatttggacgactttgaaactcctgctaaaacaaaaaatgactcatttggttcagaagta
ccagggaacagctccaagcttgatgcctctgttatgacaccagacttaagcaactgtttt
tcaaacaagagtggtctttccagaagtgaaaagtcttgtaagggaacagatgaattggaa
caaagtgacaacaaagctgcagtttcaccagaacctagttttaatcaggacccagaagag
ttgtttctggacagttctcctatcagaatgcccagaagacgtcctcatgctcatctgaag
cctgtcacaagtgatagtgaagaagaaaatgatgctgtgtctgagccttttgaagagagt
acagtcgataagaaaaaattgattgacccaaaggtgatagaagttggcgaccagtcagag
cctgaagatgacctagactacattcccccttcacccatcccagatgtaatctctaatact
acttctatattggagacaagatctaaatcagctggtactgaaagcagagacagtcaagtg
tattcaaagggacctaccacaactcaacatgaaccttctgttcaacactcaaaagacaaa
acaaatgagcagcttttccatatcatggagtccatttgttctctagttgattgcatccct
gaacatgaactgatagctctgtcatgtggaaatgagctcttactgaagagggctcaaagg
aaaaggattcttgcagttggtggcgacgctttgtttaagatgcagcagccagacagcact
gtgatttctgaacccagctccaaagaaaaatcttctttaagctgtgatacgtctagtgtc
atgtcttgcagtggctctgtccctgtgaactccaaggaagctcttcagatcaggagatct
tcaatcatctctttggactatgactctgatccctctgacagtattaccaatgtgaaaccc
ttgcacagtaaagacagtgggaaattatatgaggaaaacaagagcatctgtgattctcca
tcagcctgcagcctcacaaaaccatcttttaatttctctaagaaaacaagcacagatgtg
gatgactcagatctcttcttctcacctaagaagtcagagactgtttctcaaaataaatca
aatacaccagcaacaaccaccgctaccgaaggcatagaaccagacgacttttactttgac
gacttcgacatagatgactttaacgactcagacatccctgattactttgatgaaccctca
acttcgtcagtgtctgcacaaaagtccagcactgtgaaagaggggggaccgagcaagtcc
tcgtgggagaagaaaccaacaacaccagtgtctgcacccaagccttcaaagatctgctcc
cctgaacccaccttcagaaacccggcccatgatcggttcagagggttcaacttcccccac
tcacaggagatgatgaagatctttcacaagcgtttcggtcttcatcagttcaggtttaat
cagctagaagcaattaatgcggcgcttctgggtgaggacacgtttgttttgatgcccaca
ggtggtgggaaaagtttgtgttaccagctgccagcttgtgtgtcaccaggagtcactgtg
gtcatctccccactgaaatcactcatcgtcgaccaggtccagaaactcactacgctggat
attccagcaacaagtctgtctggtgataaaagtgacagtgaagcagggaggatttatatg
cagctctccaggaaagatcccatcattaaactgctctatgtcactcctgaaaaggtgagt
gcaagtaacaagctgatctccgccctgcagaacctgtacgagcgaggccttttggctcgg
tttgtcatagatgaggcccattgtgtcagtcagtggggccacgatttccgccccgactac
aaaaggttgcacgaactgcgtcagaaattccccaacgtgaggatgatggctctgacagcc
accgccaccccacgcgtccagaaagatatcctcaaccagctgaatatgactcggccgcag
gtgttcaccatgagtttcaaccgaacgaacctgaagtacgctgtgctgcccaagaaacct
aaaaaggttgacgaggactgcatcagctggattaagaagcactacccacgtgattctggc
atcgtgtactgcctgtcccgtaacgactgcgacgccatggccgagagtcttcagagagcg
gggatattggctctgtcgtatcacgcaggcctgagtgacggggacagagaatacgtgcag
aacaagtggattaatcaggacggctgccaggtcatctgtgccaccatagccttcggcatg
gggatcgacaagccagacgtgcgctacgtgatccacgccagtctgcctaaatcagtggag
ggttactaccaggagtcgggaagagccggcagagatggagagatctcccactgtattctc
ttctactcctacaccgacgtccaccgcatcaagaggattatcagcatggacagagaaggt
gacagacacaccaaggagactcattacaacaacctacacagcatggtgcacttctgtgag
aacatgatggagtgcagaaggattcagctgcttgcgtacttcggggagttcaagttcaac
aaaggtttctgtaaagaccatcccgacgtcacctgcgacaattgttccaaacccaatcaa
tacaagctgagaaatgtcacagaagacgtgaagaagatcgtgaggttcgtgcaggagaac
tgcgagaaagttggagcgaggtttggcaggactgctcagcaaaaccgtctgacgctaaac
atgctcgtggatatcttcctagggactaaatctgccaaggtacagtcagggatgtttggg
atgggaggggcctactccaggcacaacgcagaccgtctcttcaaaaaactggttctggat
aaagttctggttgaggacctctacatcacggtcaatggccaagctgtggcttacatctct
gccggaccaaaagccatgaatgtgctgtctggacacatgcaggtggagttctatgagacg
gagagcgcatctaccatcaggaaaaataaagccgctgtggccaagaacgtctctcagaga
gaggagatggttcagcagtgtctgaaggagttgacagatttgtgcaagcagctggggaaa
gcgtttggcattcactattacaacatcttctccactgccaccttgaaaaagatagctgag
aagctttcctctgaccctgaagtcctcctacaaattgatggtgtaacggaggacaaactg
gacaagtatggagctgaagtcattcaggtcctacagaaatattctgagtggcaactacct
gtgggggagcagactgacagtggtaacgacgggtggatagacacaacacgaggccgcgcg
aatatagattacgacgacgacgatgacgacacagagtcgtccacctacttccgcaatgag
cccgctcagggacagaagaggaagaaagctccattcttcaagtatgccaagaagagaaaa
ggatatggcaacgcaagctccaattctaaagggcgtggctacagcagcaataaatcgtgg
tcatcgtccagtttcagaggtggatcaaaagccgcaggtcggggatccaggagctcagca
ggagacgcgtcagcaggcaggagaccaggcttcttggccgccccaacccctcaaaccaac
cagaggcccttcttaaagccaactttttcgcacctgagctag
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