Lates calcarifer (barramundi perch): 108875433
Help
Entry
108875433 CDS
T04895
Name
(RefSeq) interferon regulatory factor 7
KO
K09447
interferon regulatory factor 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04620
Toll-like receptor signaling pathway
lcf04621
NOD-like receptor signaling pathway
lcf04622
RIG-I-like receptor signaling pathway
lcf04623
Cytosolic DNA-sensing pathway
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108875433
04621 NOD-like receptor signaling pathway
108875433
04622 RIG-I-like receptor signaling pathway
108875433
04623 Cytosolic DNA-sensing pathway
108875433
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108875433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108875433
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
108875433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
108875433
NCBI-ProteinID:
XP_018519912
UniProt:
A0A4W6EII9
LinkDB
All DBs
Position
LG10:17514806..17519479
Genome browser
AA seq
437 aa
AA seq
DB search
MQSPPKPQFASWLIEQVETGQYTGLCFVGQNKFRVPWKHNSRKDCKDEDSKIFRAWAVAS
GKINEFPTDKARWKTNFRCALNNLSVRFKMIKDNSKNSEDPHKIYEIINTEHNYENQPTQ
DSQEDSFMTPNIYSSPTEYFPSGNEHNLVNNLMALELDNHPTEDQQWVENYCQPNPAVLG
SYPVAAENHLQVLPAQQPYHEVHPTPVLPLPLQPTIYDLEISIHYRKTEMLKTTLSATRL
QLHYQHVDPGLNAHQLCFPSTDGLIDHKQIDYTNRILNSIQRGLLLEVRETGIYAWRQDR
CHVFASTSDPSVAHPDPRKLPQNTTVELLSFEKYVNELKKFKENNGGSPDYTINMCFGEK
FPDGKPLEKKLIMVKVVPLICRHFHEIAQMEGASSLHSANVSLQMSHNSLYDLINSVFGL
PMAEEPGRAAEPILHHI
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagccctccaaagcctcagtttgccagctggctcatagagcaagtggagacgggc
cagtacacgggcctgtgctttgtgggccaaaacaagttcagagttccctggaagcacaac
tccagaaaggactgcaaggatgaggacagtaaaatattccgggcatgggcggtagcaagt
ggcaaaatcaacgagttccccaccgacaaggcaaggtggaaaaccaacttccgctgcgct
cttaacaacctctccgtgcgcttcaagatgatcaaggataactccaagaattctgaagac
cctcacaaaatctatgagattatcaacactgagcacaattatgaaaatcagcccacacaa
gactcccaggaggattctttcatgactccaaatatctacagctctcccacagagtacttc
ccctcaggaaatgagcacaatctggttaacaatttaatggccttggaacttgacaaccat
cccacagaggaccaacagtgggtagagaactactgccagcccaatccagctgtccttgga
agttatcctgttgcagctgaaaaccacctacaggttttgccagctcagcagccttaccac
gaggtgcatcctacgccagtcctccctttacctctgcagccaactatttatgacctggag
atctccatccactacaggaaaacagaaatgttaaagaccacgttgtccgctacccgtctc
cagctccactaccaacacgtggaccccgggctcaatgcccatcagctctgcttcccctcc
accgatggtcttatagaccacaaacagattgattacaccaaccgcatcctcaacagcatc
cagagaggtctcctcctggaggttcgggagaccggtatatacgcctggaggcaggacagg
tgccacgtgtttgccagcaccagcgaccccagcgtggctcacccagacccaagaaagctg
ccccagaacaccacggtggagctcctcagttttgagaagtatgtaaatgaactgaaaaag
tttaaagagaacaatggtggctctcccgactacaccatcaatatgtgttttggagagaag
tttccagatggaaaaccactggaaaagaaactcatcatggtcaaggtggtccctctgatc
tgtcgacactttcatgagatagcccagatggagggggcttcgtctcttcacagcgccaat
gtcagccttcagatgtcacacaacagtctctatgatctcattaactctgtctttggtctg
ccaatggctgaagagccagggcgggctgctgagcctatcctacatcacatctga
DBGET
integrated database retrieval system