Lates calcarifer (barramundi perch): 108875436
Help
Entry
108875436 CDS
T04895
Name
(RefSeq) high affinity choline transporter 1
KO
K14387
solute carrier family 5 (high affinity choline transporter), member 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108875436
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108875436
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC5: Sodium glucose cotransporter
108875436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSF
Motif
Other DBs
NCBI-GeneID:
108875436
NCBI-ProteinID:
XP_018519915
UniProt:
A0AAJ7LDL7
LinkDB
All DBs
Position
LG10:complement(13797019..13806838)
Genome browser
AA seq
545 aa
AA seq
DB search
MAVDVPGLVAVVVFYIVILIIGVWASWKSKKVEKTCAGSKSEVTIIGDRNINVLVGVFTM
TATWVGGGYIMGTAEAVYSPTQGLIWAMGPPAYLINFLLGGLFFAKPMRSKRYVTMLDPF
QHRYGNMFTATLLLPALVSDILWVACILAALGGTMSIILGLSSALSIVISAAVSITYTFL
GGLYSVAYTDIIQLSFIFVSMWLCIPFLALSPAVTDNSPTAHLNQTNSHSWLGELELANA
GKWADEMLLLALGGLAYQALYQRILSAASSAQAQVTCFAAAGTVFIMGVPSVIIGAVAAT
ADWNQTAYGLPPPFERGEAGKILPLVLQYLTPTWVSVLGIGSVAAAVMSSMDSVLLSSAS
MFTQNIYKTTLRKQASEQELQWVIRVSLLLVGLAGTGLAFGGDSVFAFWLVSGDLLYCLI
FPQLVCVLHLRCANTYGAISGYVAGLLLRLVSGEPSLGIPPLLLYPGWKEENGVITQYFP
HRTVSMLSSAICVITVSWLVDLGFCHQLIPHSWDLLGVFEERKEAEVEEVPVPHEEKSSI
LNTKF
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggatgtccctggactggtggccgtggtggttttttatattgtcatccttata
attggagtctgggcatcttggaaatccaagaaagtggagaagacatgtgctggaagcaag
agcgaagttaccatcatcggtgaccggaacatcaatgtcctagtcggggttttcaccatg
acagcaacatgggtcggtggaggatatattatgggaactgctgaggctgtttattctcct
acgcaaggtcttatttgggctatgggacctcctgcatatcttatcaattttcttttggga
ggactattttttgcgaaacctatgagatcgaagcgctacgtgaccatgttggacccgttt
cagcatcgctatggcaacatgttcaccgcaacactattgctccctgctttggtcagtgat
attttgtgggttgcctgcatccttgctgccctgggaggaacgatgagcataattcttggg
ttgtcgtctgccctctccatcgttatctcggcagctgtctccatcacctatacatttcta
gggggtctctactctgttgcatatactgatatcatccagctctccttcatctttgtcagc
atgtggctctgtattccctttttggcactcagtcctgcagttactgacaactcaccaaca
gcccatctcaaccaaacaaatagccactcgtggctaggagagctggagctggcaaatgcc
ggaaaatgggcagatgagatgctgttattggctttaggggggctggcttatcaagcactg
taccagaggatcctctctgcagcctcctctgctcaggctcaggtcacctgctttgctgct
gccgggacagtttttattatgggagtcccctcagtgatcattggagcagtggctgccact
gcagactggaaccagacagcgtatggtctaccccctccttttgaacgaggggaggcaggg
aagatcctgccgctggtcctgcaatacctcacacccacctgggtatcagtgttaggcatt
ggttctgtggcagcagcagttatgtcctccatggactctgtgctgctgtcctcagcatcc
atgtttacacaaaacatttacaagacgactttgaggaagcaggcctcagagcaggagctg
cagtgggtgatccgtgttagcttgctgctggtgggcctggcaggcacaggcctggccttt
ggtggtgacagcgtgtttgccttctggctggtaagcggtgacctcctgtactgcttgatc
ttcccacagctcgtctgtgtgctgcacttgcgctgtgctaatacctacggcgctatcagc
ggctacgtagctgggctgctgttgcgtttggtgagcggggagccgtcacttgggatccct
cctctcctactgtatcctggctggaaggaggaaaacggagtcatcacacagtattttccc
cacaggactgtgtccatgctttcctctgcgatatgtgttattacagtatcctggctggtg
gatctaggcttctgtcaccaactaattcctcattcatgggatttactgggggtttttgaa
gagagaaaagaagcagaggtggaggaagtacctgttcctcatgaggaaaagagcagtatt
cttaatacaaaattctag
DBGET
integrated database retrieval system
