Lates calcarifer (barramundi perch): 108875592
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Entry
108875592 CDS
T04895
Symbol
si:ch211-286b5.4
Name
(RefSeq) afadin- and alpha-actinin-binding protein isoform X1
KO
K06085
synovial sarcoma, X breakpoint 2 interacting protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04517
IgSF CAM signaling
lcf04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108875592 (si:ch211-286b5.4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108875592 (si:ch211-286b5.4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108875592 (si:ch211-286b5.4)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Centriolar satellite
108875592 (si:ch211-286b5.4)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
KIP1
Motif
Other DBs
NCBI-GeneID:
108875592
NCBI-ProteinID:
XP_018520117
UniProt:
A0A4W6CCA1
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Position
LG5:complement(22442719..22446629)
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AA seq
451 aa
AA seq
DB search
MASRFGQRRVGRHQEYSDSCLVRDPSPNLLNQFSHSASWWADREEHIEQGDLLREQLKEM
DDHVGRLQDMLRCERAKCTRLQLRCNQQEAELRRREQHSNRLKERMSQLTDRHREKGPSI
EVLNFPPGGRSKREQPIKSFRPAARREEATLRLMLERREVELREAMKLRHSLTTLLHALR
VDMEQTLSDSVDIQDDAQNGDKTLDKAEVALGDHVTGGVVQSWRQVQRRLGDVLSKGHTG
VGTDHDKLLAHLETELKESQQLVRLQQQLLQGSLASPVPSELADSYFLEEWERLQARWAE
LDHQRRTFERERQSFTDAAIRLSRERCDFEQQRASLVKKQYLCDSPQFVKGAPSSNRRES
TALDFSVLGPTSISGCLPITPSSTESGTAAPSDIRQGRVRVQTPSTPELYAALNLSYNCR
ATEDDHQSEKWDSGADRIMHTPHAPHLDWSF
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaggtttggccagaggagagttggaagacaccaggagtactcagactcctgt
ctggtaagggatcccagccccaaccttctgaatcagttctctcacagcgcctcctggtgg
gctgacagggaggagcacatagagcaaggagacttactcagagagcagctaaaggagatg
gatgatcatgtgggcaggctccaggacatgctgaggtgtgagcgggccaaatgcacccgc
ctgcagctgcgttgtaaccagcaggaggcagagctgaggcgccgagagcagcacagcaac
agactgaaggagcgaatgtcacagctcactgacagacacagggagaaaggaccctccata
gaggtgttgaactttccacctggaggccgaagcaaaagagaacagcccatcaaatcgttc
aggcctgctgcaagacgagaagaagcgacactgcgtctgatgctggagcgcagagaagtg
gagctcagagaggcaatgaagctgcgccacagcctcaccactttacttcatgcactcaga
gtcgacatggagcagaccttgtcagactcggtggatattcaggatgacgcccaaaatgga
gacaaaacgttggataaagctgaggtagcgcttggtgaccatgtgacaggaggtgtggtt
cagagttggaggcaggtacagaggagactgggcgacgtcctgtcaaagggtcacactggt
gttggtactgaccatgacaaactgttggctcacctagaaactgaactgaaagagagtcaa
cagcttgtcagattacaacaacagctgctgcagggtagcctcgcctcacctgtcccctct
gaactggctgattcctactttttggaagagtgggaacgtcttcaggcgcggtgggcagag
cttgatcatcagaggaggacttttgaaagggagaggcagtccttcactgacgctgccatc
cgactgagccgtgagcgctgtgattttgagcaacagagggcctctcttgtgaagaagcag
tatttgtgtgactcgcctcagtttgttaaaggagcaccaagcagcaacagaagagagagc
actgctctcgatttctcagttttgggacccaccagcatatctggctgtcttcccattact
ccatcgtccactgagtcagggacagctgctccttctgacatacgtcagggcagggtcaga
gttcaaactcccagcactcctgaactctacgctgccctcaatctatcatacaactgcaga
gccacagaggatgatcatcagtcagagaagtgggacagcggggcagacaggatcatgcac
acaccacatgctccacacttggactggtcattttaa
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