Lates calcarifer (barramundi perch): 108875618
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Entry
108875618 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108875618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108875618
03036 Chromosome and associated proteins [BR:
lcf03036
]
108875618
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108875618
Coactivators
SAGA/TFTC/STAGA complex
108875618
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108875618
STAGA complex
108875618
TFTC complex
108875618
SAGA complex
108875618
SLIK complex
108875618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
Beta-prop_WDR35_TULP_N
LisH_TPL
PROPPIN
CDK5RAP3
VPS8_N
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
108875618
NCBI-ProteinID:
XP_018520160
UniProt:
A0AAJ7LDX7
LinkDB
All DBs
Position
LG5:23088126..23093882
Genome browser
AA seq
766 aa
AA seq
DB search
MFSFFSSLAHAHFILKMAAVQGGLVDAAEEKDIKTEPASDGFGNNNANDGRLLSTSPGSS
ASTGSNKTVAGAPEDQQTLLAVLQFLKKNKLNESVEILRREAGLPEDSLDPKGTDASGAG
SGGASGGVDLEGGDASSLLSRVTVSASAGAQAPTKAAAGEDQPDVSVVLSAYSQQGDPAL
YEVYYSGLKKFIETVLDCHRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQEC
YYEDDLRILSGLTKKEHMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNII
QEHLYIDIFDGMPRSKSQIDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEA
ENEEGKPKKKKPKKDSMGSKSKKQDPNAPSQNRIPLPELKDSDKLDKIMYMKESTKRIRL
GPDNLPSICYYTFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADL
NLIDKESDDVLERIMDEKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQ
TFTCLVGYKGHNYPVWDTQFSPHGYYFVSGGHDRVARLWATDHYQPLRMFSGHLADVTCT
RFHPNSNYVATGSSDRTIRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRV
LLWDIGHGLMVGELKGHTDTIYSLRFSRDGEILASGSMDNTVRLWDAMKAFDDLETDDFT
AATGHIHLQDNSQELLLGTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgttttcctttttttcaagcctcgcacatgcgcatttcattttgaaaatggcggccgta
caaggtggtctggtcgatgcggctgaggaaaaagacataaaaacagaaccagcgagtgat
ggcttcggaaataacaatgcaaacgacggaagattgctctctacgtctcccggctccagt
gcgtcgactggaagcaacaaaactgtggctggagccccggaggaccaacagacgctgctg
gcagttctgcaattcctcaaaaagaacaaactgaatgagtccgtcgaaattctacgccgt
gaagcgggattaccggaagattctctggatccgaagggaaccgatgcctccggggcaggc
tcgggaggtgcttcgggcggtgtggacctagaaggcggggatgcgagctctcttctcagc
cgggtgaccgtctcagcctctgccggagcccaggcgccaaccaaagcagcagcaggagag
gatcagccagatgtcagtgtggtgctgtcagcttacagccagcagggggacccggctctg
tatgaggtttactacagtggcctgaagaagttcatagaaacggttttggactgtcacaga
gcagaattgtcccaagtcttctaccctctgtttgtccacatgtatctggagttggtgtac
aacaatcacgaaagtgaggccaaggctttctttgaaaagtttagcggagaccaggagtgc
tattatgaagatgacttgcgtatcttgtccggcctgacaaagaaagagcacatgagaggc
aacgagacactcctcgacttccgcaccagcaaatttgtcttgcgcatctcccgtgattct
taccagctgctgaagagacaccttcaagagcgtcagaacaaccagatctggaacattatc
caagagcacctctacattgacatctttgatggcatgccacgcagcaagagccagatcgat
gccatgtctggcagcttggctggagaggccaagcgcgaggccaataaggctaaggtttac
tatggattgctgaaggagccggaaatcgagctgcctcttgatgatgaggatgaggaggca
gagaatgaggagggtaaacccaagaagaagaaacccaaaaaggacagtatgggctccaag
agcaagaagcaggatcctaatgcaccatcacaaaataggatacctttgccagagctaaag
gattcagataagctggacaagatcatgtatatgaaggagtccaccaagaggatccgactg
ggaccagataacctcccctctatctgctactacactttcctaaatgcgtaccagggtttg
actgcagtggactttacagatgactccagcctgattgcgggaggctttgctgattccaca
gtacgggtttggagcgtcacgccgaaaaagctccgcaaggtcaagtctgcagcagacttg
aatctgattgacaaagagtcagatgatgtgctggagaggatcatggatgagaagacggcc
agtgagtcaaagatcctctatggacacagcggcccggtgtatggcatcagcttcagccca
gacagaaactacctgttgtcaagctctgaagatggtacggtcaggctgtggagtctccag
acatttacttgtctagtgggctacaaaggccacaattacccggtgtgggacacccagttt
tctccccatgggtactattttgtctctgggggacatgacagagttgcccgtctctgggca
acggatcactaccagcctctacggatgttttctggccatctagctgacgtcacttgcacc
cgtttccaccccaactccaattacgtggccacagggtcgtctgatcgcaccatccgcctc
tgggacgtcctgaacggaaactgtgtccgcatattcactggtcataagggtcctatccat
gcactggctttctcacccaatgggaagttcttggcctctggagccactgacggcagagtt
cttctatgggacatcggccatggactgatggttggagagctcaaaggccacacagacacc
atctattccctcaggttcagcagagatggcgagatccttgcctctggctccatggacaac
acagttcgtctttgggatgcaatgaaagcatttgatgatttagagactgatgacttcaca
gcagccacaggacacattcatctacaagataactcccaggaacttctgcttggcacctac
atgactaaatctacacctgtcatacaccttcacttcacccggagaaacctgctgctggcc
gctggggcgtacaatccataa
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integrated database retrieval system
