Lates calcarifer (barramundi perch): 108875725
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Entry
108875725 CDS
T04895
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108875725
04020 Calcium signaling pathway
108875725
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108875725
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
108875725
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
108875725
NCBI-ProteinID:
XP_018520353
UniProt:
A0AAJ7LD61
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Position
LG5:complement(22581085..22592975)
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AA seq
1299 aa
AA seq
DB search
MVLLNCVTLGMYTPCGEGSLNTESGQVLDGLVLTYFTLEMLIKMAALGVFGCQGSYLSNN
WNKFDVFIIFGEVLDYFLESFGIHMQFCQALRPMRLISRVPSLRDLVTILLDTVPMLANV
LILYIFVIHIFGVVGVQLWAGQLRNRCFLGEDIPKKYNISLSPYFVSKYGEKGPFICSND
NKYGMRRCRDVPPYREDGETCSLAANEAVARTNSCVNWNMYYNVCRAGDHNPHMGATNFD
NIGYALIAIFQVVTLEGWSEIMFYVMDAHSFWSLVFFILVTILGSFIMMNVCAVVIATQF
SENMDRETGEQRVGAVVQLCTKLICWLRRIRHPNKVHPSGRKRRSDGVVGRAWMPFKRKL
ERIVKSKLFDRVIMFAVFLSILTIAIEHHGQPIALTRMLQISNITFTFIFVVEMVLKLMA
LSWGYFRDRNNIFDFVIVIISLWEIIAKADGRLSVLRAFRLLRFVRLVHFLPYLKRQLLV
LKRTMEEAGSLCVLLLFVTFIFSVMGMHLFGCTFSFKMQKGHNVDDRKNFDSLLWSMVTV
FQILTQEDWNLVLYNAMAATSPWAAFYFVAVIVLGKHVILNVLVGIVVESFQARRSSSPQ
DSTSSSPSSCTPESDSSLTDSSQTDGSSGSKQESSVSPCESSRCTVIDSAPTDTDKDNRY
LNWIQRVLRWSKQHEDWSFYMLSPQNRFRVFCQRVITHKMFDHVVLLFILLSCVTIAMER
PGIDPESTERWILNMSRYVFSAVFLVEMLFKVLALGLVFGEDTYCRSSWNIVDGSLVVLS
LVHIFVSLASAGKDNWMGILKVLRLLRTLRPLRVIKRAPKLKLAVEALITSVKPIGNIVL
ICCAFFFFFGILGVQLFKGKFYYCEGQNTRNITSKTDCLSANYQWVRKEYNFDNLPQALM
ALFVMYSKDGWVNIMYDGLDAVGVDQQPVKNYNEWMLLFFISFMIMSFFLLDMFIGVMVE
TFHQCQQEQKKGDKGEERGGAPQDQGREPEQPYYTNYSPIRRAIHTLSTSNFLDLFMTVI
IFISVLMMAFEHYNQPPYIEKLTEYSYYVFTAILIIEVLLKLVAFGAVRFIQISWNLLDV
FVVLVSIISIIFNEMKMADAIPINPSILRVCRVLRLAQVLKAKKIRVLLKTIIKTLTQVG
NICLLFTFFFFIYAALGVELFGKLECTIDHPCMGLHRHANFKHFGMALLTLYQVCTGDNW
NGIMKDTLRECRPDDDSCLRYLSWASPIFFTSFVIMAQFVLVNLVVAAIMQALEDSHENN
PTNFCLPPEEENMQDTEQELLCAGDRSNSSHIYADRSSE
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgctgaactgtgtgactctgggcatgtacacaccttgcggggagggaagctta
aacactgagagtggtcaagtactggatggtcttgtccttacgtactttacattggaaatg
ctcatcaagatggcagccctgggagtctttggctgccaaggaagttacctcagcaacaac
tggaacaagtttgatgtcttcattatatttggagaggtgttggattattttctggagtcc
tttggcatccacatgcaattctgtcaggcactcaggcctatgcgactcatcagcagagtc
ccaagtttgcgagatctggtgacaatactcctggacactgtgccaatgcttgcaaatgtt
ctcatcctctacatctttgtcatccacatctttggtgttgtgggggttcagctgtgggcc
ggccaactccgcaaccgctgcttcttgggagaggacatccccaaaaagtacaacatatcc
ttgagtccatactttgtgtccaagtatggtgaaaaaggcccgttcatctgttcaaatgac
aacaagtacgggatgcggcgttgccgtgatgtgcccccttacagggaggatggggaaacc
tgctcactggctgcgaatgaggctgttgccaggactaacagctgcgtaaactggaacatg
tactacaacgtctgtcgtgccggggaccacaaccctcacatgggcgctactaattttgac
aacattggctacgccctgatagccatattccaggttgtcacactggaaggatggagcgag
attatgttttatgtcatggatgctcattccttctggagtttggtgttttttatactcgtc
accattctgggctccttcatcatgatgaatgtgtgcgcggtcgtcatcgccacacagttc
tcagagaacatggacagggagacaggagagcagcgagtcggtgctgtcgtacagctctgt
accaagttgatctgctggctgaggaggatcagacatcctaacaaggtgcaccccagtggc
aggaagagaaggagtgatggtgtagtgggtcgggcctggatgccattcaagagaaaactt
gagaggatcgtcaaaagcaaactctttgaccgagtgatcatgtttgctgttttcctcagt
attctcaccattgccattgaacaccatgggcagcctatagcattgacacgtatgttacag
atcagtaacatcacgttcaccttcatatttgttgtggagatggtcttaaagctgatggcc
ctctcgtggggatacttcagggaccgaaacaacatctttgactttgtcatcgtcatcatc
agtttgtgggagataatcgctaaagctgatggcaggctgtcagtcctgcgtgcctttcgt
ctgctgcggtttgtgcggctggttcacttcctcccttacctgaagagacagctgctggtg
ctgaagaggacgatggaggaggcaggctcgctctgtgtgctactgctgtttgtcactttc
atttttagtgtaatgggtatgcatctgtttggttgtacatttagctttaagatgcagaag
ggacacaacgttgacgaccggaaaaactttgactccctactgtggtccatggttactgtg
ttccagattctgactcaggaggactggaatctggtgctatacaacgccatggctgccacc
tccccgtgggctgctttctactttgttgccgtcattgtgctcggaaaacatgttattctc
aatgtgcttgtggggatagtagttgagagcttccaggccaggcgctcctctagccctcaa
gactccaccagctcctctccaagcagctgtacccctgagagtgacagttcactgacagat
agcagccagacagatggctcctcaggatccaaacaagagagctctgtctctccctgtgag
tccagcagatgcactgtgattgactctgctcctacagacacagacaaggacaacagatat
ttgaactggatccagagggtgctgcgctggagtaaacagcatgaggactggtcattctac
atgctgtctccacagaacaggttccgtgttttctgccaacgtgtgatcactcacaagatg
ttcgaccatgtggtgctgctctttattctcctgagctgtgtcaccattgctatggagagg
cctggaatagaccctgaaagcacggagagatggatcctgaatatgtcccgttatgtgttc
tctgctgttttcctggtagagatgctctttaaggttctggctcttggtctggtgtttgga
gaggacacctactgccgttcctcctggaacatcgtggatggttccttggtggttctgtct
ttggtccatatctttgtgtctctggccagtgcaggcaaagacaactggatgggcatcctc
aaagttctacgcctgctacgcacacttcgcccactgagagtgatcaagcgagccccaaaa
ctgaagctggctgtggaggctctgatcacatcggttaaacccatcgggaacattgttctc
atttgttgtgctttcttctttttctttggcatccttggggtgcagctgttcaaagggaag
ttctactactgtgagggtcagaacaccagaaacatcaccagcaagactgattgtctgtcg
gccaactatcaatgggtacggaaggagtacaactttgacaacctgcctcaggctctgatg
gccttgtttgtgatgtactctaaggatggctgggtcaacatcatgtatgatgggctggat
gctgtgggagtagaccaacagcctgtgaagaactacaacgaatggatgcttctcttcttc
atttccttcatgattatgagcttctttctcctcgacatgttcattggtgtgatggtggag
accttccaccagtgtcagcaggagcagaaaaaaggggataaaggagaggagagaggaggg
gcaccacaagaccagggcagggagcctgagcagccatattacacaaactattctcccata
cgtcgagctatccataccctgagtaccagcaacttcctggatctcttcatgactgtcata
attttcatcagtgtcttgatgatggcttttgaacattataatcagcctccgtacatagag
aagctcacagagtactcctactatgtgttcactgccatcctgatcattgaagtcctgctg
aaacttgtagcttttggtgcagtgaggttcatacaaatcagctggaatctcttggacgtc
tttgtagtcttggtttccatcatcagcatcattttcaacgagatgaaaatggcagatgca
attcccatcaatcccagcatcctcagagtctgtagagtactcagactggcacaagtgctg
aaggccaaaaagatacgagttcttctgaaaaccattatcaagacgctcacacaggttgga
aatatttgtctgctcttcacattcttctttttcatctacgctgcgctgggagtggagctc
tttggcaagctagaatgcaccatcgatcacccgtgcatgggtttacatcgacacgccaac
ttcaagcattttgggatggccctgctcacactataccaggtgtgcactggagacaactgg
aacgggattatgaaagacacgctgagggagtgtcgtcctgacgatgacagctgtttgaga
tacctgtcctgggcctctccgatcttcttcaccagctttgtgatcatggcccagtttgtg
ttggtaaacctggtggtagcagcgattatgcaagctctggaggacagccatgagaacaac
cctactaacttctgtctccccccggaggaggagaatatgcaggacactgagcaggaactg
ctgtgtgcaggggacagatccaactccagccacatctacgcagacagatcctcagagtaa
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