Lates calcarifer (barramundi perch): 108875765
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Entry
108875765 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04137
Mitophagy - animal
lcf04144
Endocytosis
lcf04340
Hedgehog signaling pathway
lcf04350
TGF-beta signaling pathway
lcf04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108875765
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108875765
04350 TGF-beta signaling pathway
108875765
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108875765
04137 Mitophagy - animal
108875765
09144 Cellular community - eukaryotes
04520 Adherens junction
108875765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108875765
04121 Ubiquitin system [BR:
lcf04121
]
108875765
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108875765
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108875765
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
108875765
Autophagy
Mitophagy
Other mitophagy associated proteins
108875765
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
HECT type E3
108875765
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
108875765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
108875765
NCBI-ProteinID:
XP_018520399
UniProt:
A0A4W6FWN7
LinkDB
All DBs
Position
LG5:complement(19224246..19286411)
Genome browser
AA seq
776 aa
AA seq
DB search
MSNQGVRRNGPVKLRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVRNTLDPK
WNQHYDLYIGKADSITISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLNKL
GPNDNDTVRGQIVVSLQSRDRIGTGGPVVDCSRLFDNDLPDGWEERRTASGRIQYLNHIT
RTTQWERPTRPASEYSSPSGRPLSCVVDENTPVMTPVNGAEASGPPGEHRIQERRVRSQR
HRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNCEELG
PLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNSPSPNGSRVAMDSQNTNL
SHPTQLKDQGVPGGPQQALSPAQLPEEAECLTVPKYKRDLVQKLKILRQELSQQQPQAGH
CRIEVCREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNP
YYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQL
LGKPITLDDMESVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIP
VTEDTKKEYVRLYVNWRFLHGIEAQFLALQKGFNEVIPEHLLKAFDEKELELIVCGLGKI
DISDWKSNTRLKHCTPDSNIVKWFWKAVESFDEERRARLLQFVTGSSRVPLQGFKALQGA
AGPRLFTIHQIDANTNNLPKAHTCFNRIDIPPYESYDKLYDKLLTAIEETCGFAVE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaaggagttaggagaaatggcccagtaaagctgcggttgacagtcctgtgt
gcgaagaacctggcaaagaaagacttcttccggttgccagatccctttgccaaagtggtg
gttgatggttcaggacaatgccactctacagatactgtgagaaatacgctggacccaaag
tggaatcaacattatgatctatacattggaaaagcagactccatcaccatcagtgtatgg
aaccacaagaagatacacaaaaagcagggcgcaggtttcctgggctgtgtccgcctcctg
tccaatgccatcaacagactcaaagacactggctatcagagactggacctgaataagctg
ggccccaatgacaatgatactgtgagaggacagatagtagtaagtcttcagtccagggat
cgcatcgggacaggagggccagtggtggactgcagtcgtctgtttgacaatgatttacct
gacggctgggaagagaggaggacagcttctggaaggatacagtatctgaaccacatcaca
cgcaccacgcaatgggagagacctaccaggccagcgtcagagtactccagcccatcaggg
cgtccgctgagctgcgtggtggacgagaacacgccagtgatgacacctgttaatggggcc
gaggcaagcggcccgccgggagaacatcggatccaggagaggcgggtgcgatcgcagcgg
catcgtaactacatgagtcggacacaccttcatacaccgcctgaccttcctgagggttat
gagcaaagaacaactcagcagggccaggtctacttcctccacacacagactggagtcagc
acctggcatgacccacgggtacccagggacctaagcaatgtgaactgtgaggagcttggc
ccactgccaccaggctgggagatcagaaacaccgccactggccgcgtctactttgtcgac
cacaacaatcgaacaacacagttcacagacccgcggctgtctgctaacctgcatctagta
ctcaacagcccaagtccaaatggttcccgtgtggccatggacagccaaaacactaacctc
agtcatccgactcagttgaaggaccagggtgttcctggtggccctcagcaagctctgtca
cccgcccagttacccgaagaagcagagtgcctgacggtgcccaagtacaagagagacctg
gtgcagaagctgaagatcctgcggcaggaactgtctcagcaacaaccccaggctggccac
tgccgcatcgaagtctgccgtgaggagatatttgaggagtcgtaccgacaggtgatgaag
atgcgtccaaaggatctctggaaaagactgatgatcaaattcagaggagaggagggactg
gactatggcggggtagcaagggagtggttatacctgctgtcccatgagatgctgaacccg
tactacggcctgttccagtactccagagatgacatctacactctacagattaatcctgac
tctgctgtcaacccggagcatctgtcgtacttccacttcgtgggtcgtatcatgggaatg
gcggtgttccacggccactacattgatggaggtttcaccctgcccttctacaaacagctg
ctgggaaaaccgatcacgctggacgatatggagtctgtcgatcctgacctccacaacagc
ctcgtctggattctggacaatgacatcactggcgtcctggatcacactttctgtgtagag
cacaatgcctacggagaaatcatccaacatgaactgaaacccaatggcaagagtattcct
gtcacagaggacaccaagaaggagtatgttaggctgtatgtgaattggcgtttcctgcat
ggcatcgaggcccagtttctggccctgcaaaaaggcttcaatgaggttatccctgagcac
ctcctcaaagcctttgacgagaaggagctggagctgattgtgtgtggcctgggaaagatt
gacatctcagactggaagtccaacacccgtctgaagcactgcacccccgacagcaacatc
gtcaagtggttttggaaagccgtggagtcgtttgacgaggagaggagggcccgactactg
cagtttgttactggctcgtccagagtcccgctgcaaggctttaaagctttacagggtgct
gcagggcccagactcttcaccattcatcagattgatgccaacaccaacaatctacccaaa
gcccatacctgcttcaatcggattgacattccgccctacgagagctacgacaagctgtac
gacaagctgctgacggcgatcgaggagacctgcggctttgcagtggaatga
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