Lates calcarifer (barramundi perch): 108875838
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Entry
108875838 CDS
T04895
Name
(RefSeq) cilia- and flagella-associated protein 52
KO
K24728
cilia- and flagella-associated protein 52
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108875838
Cilium and associated proteins [BR:
lcf03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
108875838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
Beta-prop_EML
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_EML_2
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_like
NBCH_WD40
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_NWD2_C
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_NOL10_N
Beta-prop_WDR75_1st
KNTC1_N
Beta-prop_RIG_1st
Beta-prop_SCAP
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
DUF6923
WDR54
Motif
Other DBs
NCBI-GeneID:
108875838
NCBI-ProteinID:
XP_018520516
UniProt:
A0AAJ7PEC8
LinkDB
All DBs
Position
LG5:complement(18039943..18049663)
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AA seq
620 aa
AA seq
DB search
MAVETHGVPQLELEAVIGFNGHVFSGLRVHPDREHLIYPLGCTVILKRIKDGKQEFLHGH
TNNVSCISVSKSGSYIASGQVNFMGFKATVIIWDYAQRTIYAQLLLHKAKVEALAFSPND
KYLVSLGGQDDGSIVIWNIETKQAICGSPASAHSAGHCLTVQYSNTNDNIFVSAGSGTLR
VWELDLPNRKIRPTECNTGKLKRIVKCIEVAEDDQFILCGTTSGDIMKINLKTGLLSDCG
PVKTKYSLGVNVIRILKSGNLLVGSGSGTFTLCSKTNFKTLKEVQLEKGVTSIAIRGEGQ
QFFVGTEAAQMYRFNYVDFKAELISTSHNSAVKDVAITFGTSELFATCSEEDIRLWHIDK
PKELLRITVPNMTCNSLDFMADGHSIISAWNDGKIRVFAPESGRLMLVIDNAHRMGVTAI
AGTRDCKRIVSGGGEGQVRVWELQPRCHRLLETMKEHKATVACIKIKSDDKECVTASADG
ACIIWDIVRFVSLQMVIANTLFRTVCYHPEEYQLITSGTDRKVTYWDVYDGSAIRELEGS
QSGAINGVHISQDGKHFVTGGDDKLVKVWDYMEGVVTHVGIAHGGSITSTKIFSNNQTLV
STSADGAILRWRFPHPPSSS
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgaaacacacggcgtgcctcagcttgaactggaggctgttattgggttcaac
gggcatgtgttttctggcttgagagtccacccagacagagagcacctcatctatcctctg
ggatgcacagttattctgaagagaatcaaagatggcaagcaggagttcctacatggacac
acaaataacgtgtcctgtatctcagtgtccaaaagtggatcatatattgcgtctggacag
gtcaacttcatgggctttaaggctacagtaattatctgggactatgcgcagcgaacgatc
tacgcccagctgctgctccacaaggctaaggtggaggcactggctttctctcccaacgac
aagtacctggtgtcccttgggggtcaggatgatggcagcattgtcatatggaatattgaa
accaagcaggccatctgtgggagcccagcttcagctcacagcgctggtcactgcctcact
gtgcagtactcaaatacaaatgacaacatctttgtttctgcagggagtggaacattgcga
gtttgggagctggacctccccaacaggaagatccgacccacagagtgtaacacaggaaag
ttgaagaggattgtgaaatgtatagaggttgcagaggatgatcagttcattttatgtgga
accaccagtggagatataatgaaaatcaacctgaagacggggctgctgagtgactgtggt
ccagtcaaaacaaaatacagcctgggtgtcaatgtcataaggatactgaagtctgggaac
ctgcttgtaggctctggatctggcaccttcactctgtgttccaagactaacttcaaaact
ctgaaggaagtccagctggaaaagggggtgacctccatcgctataagaggagagggccag
cagttctttgttgggacagaggctgctcagatgtaccgcttcaattatgtggacttcaaa
gctgagctcatatccaccagccacaacagtgccgtcaaggatgtagccattacttttgga
acatctgagttatttgccacctgctctgaggaggacatcaggttgtggcacatcgacaag
cccaaagagctgctgcgcataaccgtacccaacatgacctgcaattccctggacttcatg
gctgatggacatagcatcatcagtgcatggaacgatggtaagattcgcgtattcgcgcca
gaaagtggtcgtctcatgctcgtcattgacaatgcgcacagaatgggtgtgacagccatc
gctggcaccagggactgcaagaggattgtcagtggagggggagagggacaggtgcgtgtg
tgggagctgcagcctcgttgccatcgcctgctggagaccatgaaagagcacaaagccact
gttgcttgtatcaaaatcaagagtgacgacaaagagtgtgtcactgccagcgctgatggt
gcctgcatcatctgggacatagtgagatttgtgagtcttcaaatggtgatcgccaacacg
ctgttcaggaccgtgtgctaccacccggaggaataccagctcatcaccagtggcactgac
agaaaggtcacctactgggacgtgtacgacggctcagccatcagagaactggagggctcg
cagtctggggccatcaatggcgtgcacatctcacaggacggcaaacactttgtgacaggt
ggcgatgacaagctggtgaaggtgtgggactacatggaaggtgtagtaacccacgtaggg
atagctcacggcggcagcatcaccagcaccaagatcttctccaacaaccaaaccttagtc
agcaccagcgcagatggggccattctccggtggaggttccctcaccctccttcttcctct
taa
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