Lates calcarifer (barramundi perch): 108875892
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Entry
108875892 CDS
T04895
Name
(RefSeq) U3 small nucleolar RNA-associated protein 6 homolog
KO
K14557
U3 small nucleolar RNA-associated protein 6
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108875892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcf03009
]
108875892
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108875892
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP6_C
U3_assoc_6
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
108875892
NCBI-ProteinID:
XP_018520596
UniProt:
A0AAJ7LEI9
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Position
LG5:complement(17479337..17487899)
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AA seq
595 aa
AA seq
DB search
MAEIVQQRIEERIPELEQLERVGLFTKKEVKSIIKRATALEYKLHRLIVNKEDFIAYIQY
EINVLELIKKRRAHIHYQFKREEIEFPIVHRINSIFRRATNKWKDDVQLWLSHVAFCKKW
ATKGQISKVFSSMLAIHPDKPALWIMAAKSELEDRSSSESARHLFLRALRFHPNNKKVYQ
EYFRMELLHCEKLRKQKEELEKAEMDLGEYEFSPEILSGKLAEVVYRDATGKINEAEFVI
SLLNIAAIFNFTKELQDSILQDLQTNYTEDSLTWDFMAKRELDAPGLGEELQSAKGRATD
VNRREERCCQVYEEGVKSLNTEPMWTCYVAFCLERMRRKTNVQELKEKRQERLLGVLQRA
HDSLLLKEDYYKNWLQILLSSGDAEGAASVAMAASQRYSQSVSAWTLSLQTLMQLGSEDI
SRLFQDALTHVNPKESLPLWQLQVQWSAANQRPEETEAVFKRGLLSAVAAVAMEMKESYL
DWSYSTGGYKKARKTFTSLQENRPLSKAFFTRMIQIEKEQEIPKMNSLRDYYERALQEFG
TTDDDLWLQYIQEELGPSGQPENCGKIHWRAMKFLEGDSVERFTSKYTLLQTGHL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggcggagatcgttcagcagcggattgaggagagaatccctgagctggagcagctggag
agagtgggactgttcaccaagaaagaagtcaaatccataatcaagagagcaacagcgctg
gaatataagctccacagattgatcgtaaacaaagaggacttcattgcatacatccagtat
gaaatcaacgttttagagctgatcaagaagagaagagcgcacatacactaccagtttaaa
agagaagagattgagttccccatcgtccatagaataaacagtatcttcagaagagcaaca
aataagtggaaggatgatgtgcagctttggctctcacacgttgctttctgtaagaaatgg
gccaccaaaggccagatcagcaaggtgttctcctccatgcttgctattcatcctgacaaa
ccagccctgtggatcatggctgccaagagtgagttggaggacagaagttcttctgaaagt
gccaggcacctgtttctgagagctctgcgcttccacccaaacaataagaaagtctaccag
gagtacttccgtatggagctgctgcattgtgagaaactgaggaagcagaaggaagagctg
gagaaggctgagatggacctgggtgaatatgagttctctccagagatcctgagtggaaaa
ctggctgaagttgtgtacagagatgctacggggaaaatcaatgaggcagagtttgtcatt
tcgcttctgaatatcgcagcgatctttaacttcaccaaagaactccaggactccatcctg
caagacttacagaccaactacacagaggacagcttgacgtgggatttcatggccaagagg
gagctggacgctcctgggctgggggaggagctgcagtccgccaaaggccgggccacggat
gtcaaccgaagagaggagcgctgctgccaggtctatgaggagggagtcaagagtctcaac
acagagcccatgtggacttgctatgtggccttctgtttagaaaggatgaggagaaagacc
aacgtccaagagctgaaggaaaagaggcaggagaggctgctgggagtgctgcaacgtgcc
cacgactccttgctgctgaaagaggattattataagaactggctccagatcctgctctca
tctggagatgctgagggagcagccagcgttgccatggcagcctcgcagcgctacagccag
tcggtgtcagcgtggaccctgagtctgcagacgctaatgcagctggggagcgaagacatt
agcaggctattccaggatgctctcacacacgttaatcccaaggagagtctaccactttgg
cagctgcaggtccagtggagcgcagccaaccagcgtcccgaggaaacggaggccgtcttc
aagagagggctgctgtctgcagtagcggctgttgccatggagatgaaagagagctacctt
gattggtcctactccactggaggctacaagaaagctaggaagacctttacaagcttacag
gaaaaccgtcccttgtccaaggcctttttcaccagaatgattcagattgagaaggaacaa
gagattccaaagatgaacagtctgagagattactatgagagggccctgcaggagtttggc
acaacagatgacgatctgtggctgcagtacattcaggaggagctgggacccagcggacag
ccagagaactgtggcaagatccactggagagccatgaagtttctggagggggacagtgtg
gagagattcacctccaaatatactctacttcagactggacacttatga
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