Lates calcarifer (barramundi perch): 108875925
Help
Entry
108875925 CDS
T04895
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108875925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108875925
03009 Ribosome biogenesis [BR:
lcf03009
]
108875925
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108875925
Spliceosome [BR:
lcf03041
]
Complex A
U1 snRNP components
U1 related factors
108875925
Complex B
108875925
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
Helicases
108875925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
108875925
NCBI-ProteinID:
XP_018520653
UniProt:
A0A4W6EUS8
LinkDB
All DBs
Position
LG5:complement(19102480..19109470)
Genome browser
AA seq
635 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHPDVTRRPLQEVEQYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIVKQNWTE
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCSDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFGNGPKSAFGGSKAQNGG
SYGGNGGNSSGSYGNSNYSNSNGQGNFGAPANQVGAFGNQSFQGPPQFGAMQRAAQNGMN
HPPFPFNSQPPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggttttcagacagagatcgtggcagagatagagggtatggtggaggacctcct
cgttttggtggtggtggaggtggcaataggggtggacctcctccaggaaagtttggcaac
cctggtgagaggctgcggaagaagcactggaacctggatgagcttccaaagtttcagaag
aacttctaccaggaacacccagatgtcacccgcagaccacttcaagaggttgagcagtac
agacgaagcaaagaagttacggtcaaaggcagagattgccccaaaccaatcgtaaaattc
catgaagctgcatttccaagctatgtcatggatgttattgtcaaacagaactggactgaa
ccaacccccattcagtctcagggatggccagttgccctcagtggcaaagacatggttggc
atcgctcaaactgggtctggaaaaacccttgcataccttctgcctgcaattgtgcacatc
caacatcagccattcttggagcatggagatggacctatttgcttagtgctggcaccaacc
cgtgagctggctcagcaggtgcagcaagtggctgctgaatacggcagggcctcccgtctc
aagagcacctgcatctacggtggtgcacccaaaggaccccagatcagggaccttgagagg
ggtgttgagatttgcatcgccaccccaggtcgtctcattgacttcctggagtgtggtaag
actaatttgcgtcgttgcacttacttggtgctggatgaagctgaccgcatgctggacatg
ggatttgaacctcaaatccgcaagatagttgaccaaatccggccagaccgtcagaccctg
atgtggagcgccacatggcctaaagaagttcgccaactggctgaggacttcctgaaggac
tacgtccagatcaacattggagcgctgcagctcagcgccaatcacaacatcctacagata
gttgatgtttgcagtgacatggagaaggaggacaaactgatccgtttgctggaggagata
atgagtgagaaggagaacaagaccattatttttgtggagaccaaaaggcgttgtgatgag
ctcaccaggaggatgagacgagatgggtggccagcaatgggaattcatggagacaagagc
cagcaggagagggactgggtcctcaatgagttcagatatggcaaagctccaatcctcatt
gcaacagacgtggcctcccgtggcttagatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggattatatccaccgcattggacgcacagcccgaagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagtgacctg
atctctgtgctccgtgaggccaaccaggccataaaccccaagctgatccagatggcagag
gacagaggaggtcgtggaagggggggaagaggtggctacaaggacgaccgccgtgatagg
tattctgggggtgggaggagcaactttggtggtagtagctacagggacagggacagcgat
agagggtttggcaatgggccgaagagtgcctttggtggcagcaaggcccaaaatggtggc
agctatggaggcaacggtggcaactccagtggtagctatggtaatagcaattatagcaac
agcaatggacagggtaattttggtgctccagcaaaccaggtgggtgcctttggtaaccaa
agcttccagggcccccctcagttcggggccatgcagagggctgctcagaatggcatgaac
cacccgccattcccattcaactctcagccaccaccgccacaggcccaacagccaccaccc
ccaccaccgatggtgccctaccccatgccaccacccttcccacaatag
DBGET
integrated database retrieval system
