Lates calcarifer (barramundi perch): 108875932
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Entry
108875932 CDS
T04895
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108875932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108875932
03036 Chromosome and associated proteins [BR:
lcf03036
]
108875932
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108875932
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
108875932
Chromatin remodeling factors
BAF complex
108875932
PBAF complex
108875932
GBAF(ncBAF) complex
108875932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
108875932
NCBI-ProteinID:
XP_018520663
UniProt:
A0A4W6FXG5
LinkDB
All DBs
Position
LG5:16838558..16856306
Genome browser
AA seq
1675 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSSHSMMGPSPGPPSSGHSQPGPS
GYGQDNMHPLHKPMEGMHEKSMSEESRFSQMKGLSMRQGGHSGMGPPPSPLDQHSQGYHS
PLGGSDHSSPVPSNGPPSGPLMPSSSSSSSSGGPGSASTPLDGPSGDQHTLGPNNRPGPP
GSSGPGPSPGPSLGSSVPSLGSGLESAGPAGPGGPGGPGGPTPFNQNQLHQLRAQIMAYK
MLARGQPLPDHLQMAVQGKRPMPGMQQQQPMPSLAPGPAGGPGGGPAGPVPGPGPMGSGY
SRAHGMMGPNMPPPGPSGTPAGMQGQNPNGPPKSWPEGPMVNAAAPSNAPQKLIPPQPTG
RPSPAPPSVPPAASPVMPPQTQSPGQPAQPTPMMPYHAKQNRITPIQKPCGLDPVEILQE
REYRLQARITHRIAELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTA
LETALDAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEY
HRSITGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKR
LAYLLQQTDEYVANLTELVRAHKAAQALKEKKKKKKKKKKLENAESQTPAMGPDGEPLDE
TSQMSDLPVKVIHVDSGNILTGVDAPKAGQLDTWLEMNPGYEVAPRSDSEDSEEEEEEEE
EEEEPQPSATPVEEKKKITDPDSEDVSEVDVRHIIENAKQDVDDEYSGAAFARGLQSYYS
VAHAVTEKVEKQSSLLINGQLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI
TYLMEHKRLNGPYLIIVPLSTLSNWVYEFDKWAPTVVKVSYKGSPAARRAFVPQLRSGKF
NVLLTTYEYIIKDKQVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTP
LQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLR
PFLLRRLKKEVEAQLPEKVEYVIKCDMSSLQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK
TLMNTIMQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGPDLYRASGKFEVLDRILPKLR
ATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTFNDPESEYFIFL
LSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK
ILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEVWGQDMCLRMNEEDE
VPDDETVNQMIARSEEEFDQFMRMDLDRRREEARNPRRKPRLMEEDELPTWIMKDDAEVE
RLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLEEMEEEVRHKKTTRKRKR
DRDLDLPGPSSSSGGRGRGDKDDDGKRQRKRGRPPAEKLSPNPPALTKKMKKIVDAVIKY
KDSASGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHRYRSLGDLERDVMLL
FQNAQTFNLEGSLIYEDSIVLQSVFTSLRQKIEKEEESEGEESEEEEEEQEEGSESESRS
VKVKIRLGRKDKGGDRGKGRSRRTGRTRAKPVVSDDDSEDEQEEERSPSATDEES
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacaccggatccccccatgggaggcaccccgcgcccgggtccttcccccggtccg
ggtccctcccctggggctatgctgggccccagccctgggccctccccaggctcctctcac
agcatgatgggccccagccctggtcctccctcttccggacactctcagccagggccctct
ggatacggccaggacaatatgcaccctctgcacaaaccaatggagggcatgcatgagaag
agcatgagtgaagagagccgcttcagtcagatgaagggactgtctatgagacagggtggg
cacagtggtatgggccccccacccagtcctctggaccaacactcccaaggctaccactct
ccattaggtggctctgaccattccagtcctgtcccttcaaatggccccccctctggtcct
cttatgccatcatcctcttcttcctcctcctctggtggccccggctcagcctctacacct
ttagatggcccaagtggagatcaacacacgctaggtcccaataaccgccctggccctcct
ggtagctctggcccaggccccagccctggacccagtcttggatccagtgtccccagcctt
ggatctggccttgaatctgctggcccagctggccccggaggtcctggtggccccggtggc
ccaactcccttcaaccagaaccaactccaccaactcagagcccagatcatggcttataag
atgctggctcgggggcagcccctgccagaccacctccagatggctgtccaggggaagagg
ccaatgcctgggatgcagcagcagcagcccatgcctagcctggcccctgggccagcaggt
gggccaggaggtggaccagcaggaccagtaccagggcctgggccaatgggctcaggctac
agccgagctcacggtatgatgggtcctaacatgcccccaccaggcccatcagggacccca
gctgggatgcagggacaaaacccaaacggaccacccaagtcctggcctgaaggtcccatg
gtgaacgcagcagccccctcaaacgcgccccaaaagttgatcccccctcagcccactggc
cggccctctcctgcacctccttcagttccccccgccgcctcccccgtgatgcctcctcag
acgcagtcccccggccagccagcacagcctactcccatgatgccttaccacgccaagcag
aaccgcattacccccattcagaaaccctgcggcctcgacccagtggagatcctgcaggag
agggagtacaggttacaggctcgtatcactcatcgtattgctgaactggaaaacctgccg
ggttctcttgctggtgatttacgtaccaaagctactatagagctcaaagcccttagactg
cttaacttccagagacagctgcgtcaagaggtggtggtgtgtatgcgtcgtgacacagct
ctggagaccgcccttgatgctaaggcctacaagcgcagcaaacgtcagtctctgcgagag
gcccgcatcacagagaagctggagaaacagcagaagattgagcaagagcgcaaacgcagg
cagaaacatcaggagtacctcaacagcatcctccagcacgccaaagacttcaaagagtac
caccgttcaatcacaggcaaaatacagaagctgaccaaagccgtggccacctaccatgcc
aacactgaacgagagcagaagaaggagaacgagcgtattgagaaagagaggatgaggaga
cttatggctgaggatgaggagggctaccgtaaactgatcgaccagaagaaggacaaacgt
ctggcctacctgctgcagcaaactgatgagtatgtcgccaacctcaccgagctggtcaga
gctcacaaggctgcgcaggccctcaaagaaaagaagaagaagaagaagaaaaagaagaag
ttggagaatgctgagagtcagactcctgccatgggtcctgatggagagcctctggatgag
acgagtcagatgagcgacctgcctgtgaaagtcatccatgtggacagtggaaacatcctg
acgggggtggatgctcctaaagctggacagctggatacctggctggagatgaaccctggc
tatgaggtggctcctcgctcggacagtgaagacagcgaggaggaggaagaggaggaggag
gaagaggaggagccacagccctcagcaactccagtggaggaaaagaagaagattacagac
cctgacagcgaagacgtgtcggaggtggatgtccgacacatcatagaaaatgcaaagcag
gatgtggatgacgagtatagtggcgcggcgtttgcccgaggtctccagtcttattactct
gtggctcacgctgtcacagagaaggtggagaaacagtccagtttgttgataaatggacaa
ctcaaacagtatcagattaaaggtctggagtggcttgtttccctctacaacaacaatctg
aacgggatcctggcggacgagatgggtctgggaaaaaccatccagactatcgccctcatc
acatacctcatggagcacaaacgtctcaatggaccctacctcatcattgtacccctctca
actctttcaaactgggtgtatgagtttgacaaatgggcaccaacagtcgtcaaagtgtcc
tacaaggggtctcctgctgccagaagagcctttgttccccaactgcgtagtggaaaattc
aacgttttactcaccacctacgagtacatcatcaaggataaacaagtactggccaagatt
cgttggaagtacatgattgttgatgagggccaccgtatgaagaaccaccactgtaagctg
acccaggtcctgaacacccactaccttgcgccgcggcgagtcctcctgacagggacgccg
ttgcagaacaaactgcctgagctttgggcgctgctcaacttcctccttcctaccatcttc
aagagctgcagcacctttgagcagtggttcaacgctcctttcgccatgactggagagaag
gtggacctcaatgaagaggagaccatcttgatcatccgtcgtcttcacaaagtgctccgt
cccttcctgttacgcagattaaagaaggaagtggaggcacagcttccagagaaggtggaa
tatgtgatcaagtgtgacatgtcgtctcttcagagggtgttgtacagacacatgcaggcc
aagggggttcttctgactgatggatcagagaaagacaagaagggtaaaggaggcacaaag
acactgatgaacaccatcatgcaactgaggaagatctgtaaccacccttacatgttccag
cagatagaggaatccttttctgagcatttaggattctctggtgggatagtccagggacct
gacctgtatcgtgcatcaggaaagtttgaggtgttggatcgtatcctacccaaactgaga
gctacaaaccacaaagtgctgctcttctgtcagatgacctctcttatgaccatcatggag
gactacttcgcctaccgcaacttcaagtatcttcgtctggatggcaccacaaaggctgaa
gacagaggaatgttactaaagacattcaatgatccagagtcagagtactttatcttcctc
ctgagcacaagagctggaggtctcggcctcaacctgcagtctgccgacaccgtggtcatc
tttgactctgactggaaccctcatcaggacctgcaggctcaggacagagcccaccgtatt
ggtcaacagaacgaggtgcgtgtgctgcgtctctgcacggtcaacagcgtagaggagaaa
atactggccgcagccaagtacaaattaaatgtggaccaaaaggtcatccaggccggcatg
tttgatcagaagtcttccagccacgagcgcagggccttcctgcaggccatcctggagcac
gaagagcaagacgaggtctggggtcaagacatgtgtctacgcatgaatgaggaggatgag
gtgccggatgatgagacggtcaaccagatgatcgccaggagcgaggaggagttcgaccag
ttcatgcgtatggacctggatcggcggcgggaggaggcccgtaacccgcggcgaaagcct
cgtctgatggaggaggacgagctgcccacttggatcatgaaggacgatgccgaggttgaa
cggctgacctgcgaggaggaggaggagaaaatgttcggacgaggttctcggcagcgaaag
gaagtggactacagtgactcgctgaccgagaagcagtggctcaaggcgatagaggagggg
acactggaggagatggaggaagaggtgcgtcacaaaaagacaacccgcaaaaggaagagg
gaccgcgacctggatctccccggtccctcctcttcctccgggggacgaggacgaggggac
aaagacgacgacgggaagaggcagaggaagaggggacgaccgcctgctgagaaactctcc
ccaaatcctcccgccctcacaaagaaaatgaagaagatcgtggacgctgtcatcaaatac
aaagacagcgccagtgggcgtcagctgagcgaagtgtttatccagctgccatctcgaaaa
gagctgccagagtactacgaactgatccgcaagccggtggacttcaggaagatcaaggag
agaattagaagtcatcggtaccgcagtctgggtgacctggagagagacgtcatgctgctc
ttccagaacgctcagaccttcaacctggagggatcactgatatatgaagactccatcgtg
ctgcagtcagttttcaccagtttgaggcagaagattgagaaggaggaggaaagtgaggga
gaggagagcgaggaagaggaggaggagcaggaggaaggatcagagtctgaatctcgctct
gtgaaagtgaagatccgtctgggccggaaggataaaggtggagatcgggggaagggacgc
agcagacgaacaggacgcaccagagccaaacctgtcgtcagcgatgacgattctgaggat
gagcaggaagaggagcgctcccccagtgctactgatgaagagtcttga
DBGET
integrated database retrieval system
