Lates calcarifer (barramundi perch): 108875967
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Entry
108875967 CDS
T04895
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03030
DNA replication
lcf03420
Nucleotide excision repair
lcf03430
Mismatch repair
lcf03440
Homologous recombination
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108875967 (rpa1)
03420 Nucleotide excision repair
108875967 (rpa1)
03430 Mismatch repair
108875967 (rpa1)
03440 Homologous recombination
108875967 (rpa1)
03460 Fanconi anemia pathway
108875967 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108875967 (rpa1)
03032 DNA replication proteins [BR:
lcf03032
]
108875967 (rpa1)
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108875967 (rpa1)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108875967 (rpa1)
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108875967 (rpa1)
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108875967 (rpa1)
MMR (mismatch excision repair)
108875967 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
108875967 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CDC24_OB3
A_deaminase
Motif
Other DBs
NCBI-GeneID:
108875967
NCBI-ProteinID:
XP_018520723
UniProt:
A0AAJ7LDM7
LinkDB
All DBs
Position
LG21:complement(16122044..16147993)
Genome browser
AA seq
600 aa
AA seq
DB search
MTKLSEGAIEALSNGTGGNDAVLQCVNIRKIDGGNGPARFRVMMSDGRHTLSSFMLSTQL
NIMAEENRLAPNCICVLKKHVTNMLKDGRRIVIILEIDVIKPAEDVAGKIGEPTPYTEGQ
TKAPQSAPVPESRPPLQPQNRNEVNRGFNRDFGKKAPSAVPNTPGGTSKVVPIASLNPYQ
SKWTIRARVTNKSTIRTWSNSRGDGKLFSMEVVDESGEIRVTGFNQEVDKFYTLIEVGKV
YYISKCSLKIANKQYTSVKNDYEMTFSGESTVIPCDDSCDVPMVQCDFVSISDLENRDKD
AIIDVIGVCKSVEEVTRITTKSNREVTKRTLSLMDMSGKVVTVTLWGEEAEKFDGSGQPI
VAIKGAKLSDFGGRSLSASFNSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTELKGGSG
GGNTNWKALSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNG
MYRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNET
AFDEIFQQANFNTFVFRNRVKLETYNDESRIKATVMDVKPVDHKDYSKRLIMNIRKLAAQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctttcagagggtgcgatagaggctctgtcaaatggcactggtggcaacgac
gcagtgcttcagtgtgtgaatattcgcaaaattgatgggggaaatggtccagctcgcttt
cgggtgatgatgagcgatgggcggcacactctgtcctccttcatgctgtccacccagctg
aacatcatggcagaggagaacaggctggcccccaactgcatctgtgttctgaagaagcat
gtgaccaatatgctgaaggatggacgacggatagtaatcattttggaaattgatgtcatc
aagcctgctgaggatgttgctgggaaaataggtgaacctactccttacacagaaggtcag
actaaagccccgcagtcagctcctgtccctgagagccgccctccactgcagccacaaaat
agaaatgaagtgaacagaggctttaatagagactttgggaagaaggccccatctgctgtg
cccaataccccagggggcacttccaaagttgtgcccattgccagtctcaacccctaccag
tccaagtggaccatccgtgctcgtgtaaccaacaagagcaccatccgcacgtggagcaac
tctcgcggtgatggcaaactcttctccatggaagttgtggatgaaagcggagagatacga
gtgactggtttcaaccaggaggtggacaagttctacaccctgattgaggttggcaaggtc
tactacatctccaagtgctccctgaagatcgccaacaaacagtacacatcagtgaagaat
gactacgagatgactttcagcggagagtccacagtcatcccctgtgacgacagctgtgat
gttcccatggtgcagtgtgattttgtctctattagtgacctggagaatagagacaaagat
gccatcattgatgttattggagtctgcaagagtgtggaggaggtgacccgcatcacaaca
aagtctaacagagaagtgacgaagaggacgctcagtctgatggacatgtctgggaaggtg
gtgactgtgacactgtggggagaggaagcagagaagtttgatgggtctggacagcccatt
gtagccattaagggggcgaagctttcagactttggaggccggtccctctctgcatccttc
aacagcacactgatgatcaacccagacatccccgaggcatataagctcagaggctggtat
gacaaggaaggccatgccatggatggacagtctctgacggagttgaaaggtggcagcggg
ggaggaaacaccaactggaaggctctatctgacgttaagacggagcacctgggacatgga
gacaaggcagactactacacctgcattgctaccatagtgtacctgcgcaaggaaaactgc
ctttaccaggcctgcccgagccaagactgcaacaaaaaagtggtagaccaacaaaatggc
atgtaccgctgtgagaagtgtgacaaagagttccccaacttcaagtaccgcctcatcctt
tctgccaacattgcagattacggggacaaccagtgggtgacttgcttccaggagagtgca
gaggccatcctgggccagaatgcagcttacttagggcagctcaaggactcgaacgaaacc
gccttcgatgagatcttccaacaagccaacttcaatacgtttgtcttccgcaacagagta
aagctggaaacgtataatgatgaatccaggatcaaggccacagtgatggatgtgaagccc
gttgaccataaagactacagcaagaggctgatcatgaacataagaaaactggctgcccag
tag
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integrated database retrieval system
