Lates calcarifer (barramundi perch): 108875998
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Entry
108875998 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat domain phosphoinositide-interacting protein 1-like
KO
K17908
autophagy-related protein 18
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04136
Autophagy - other
lcf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108875998
04136 Autophagy - other
108875998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108875998
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108875998
Membrane trafficking [BR:
lcf04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
108875998
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108875998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40_MABP1-WDR62_2nd
WD40
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_RSE1_2nd
EIF3I
Beta-prop_NWD2_C
CPSF_A
Beta-prop_HPS5
RMC1_N
BCAS3_WD40
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
108875998
NCBI-ProteinID:
XP_018520764
UniProt:
A0AAJ7PEJ2
LinkDB
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Position
LG23:complement(6492187..6499495)
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AA seq
443 aa
AA seq
DB search
MESQDVPDGPTVHRGFICASFNQDTTSLSVGTKTGYRLFSVTAVDKLDCIHEGVECPDVY
IVERLFSSSLVVVVSLSMPRRMNVYHFKKGTEICNYSYSNNILSVRLNRQRLVVCLEESI
YIHNIKDMKLLKTLLNTPTNPSGLCALSVNHSNSYLAYPGSATIGEITIYDANNLSTVTL
IQAHDSPLAALTFNASGTKLASASEKGTVIRVFSVPEGQKLFEFRRGMKRYVSISSLSFS
ADAQFLCASSNTETVHIFKLEQHSPSQEEESPTWSAYVGKMFTAASTYLPTQVSDMMHQD
RAFATVRLNMFGLKNICALATIQKLPRLLVASSDGYLYIYNVDPQDGGECVLVQKHRLFD
SSEEPVEQKEEEKPEDISPQPSSQSYAATVALPSTPPSSTTLMGYSEDGGAQKGEVIPEH
EFAEGPVCLDDENEFPPVGNQSN
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccaggacgtgccggacggccctacggtgcaccgaggcttcatctgtgcgtcg
tttaaccaggacaccacttctctgtcagtgggcaccaagaccggctaccgactcttctca
gtcactgctgtggacaaactggactgcatccatgagggagttgagtgcccggacgtgtac
atagtggagcggctgttctccagcagtctggtggtggtggtcagtctgtccatgccgcgg
cgaatgaacgtctaccatttcaagaaaggcacagagatttgcaattacagctactccaac
aacatcctctccgtcaggctcaacagacagcggctggtcgtgtgcctggaggagtcaatc
tacatccacaatatcaaagacatgaaactactcaagaccctgctcaacacacccaccaac
ccctcaggtctctgcgctctctccgtcaaccacagtaactcctacctggcgtaccctggc
agtgccaccatcggcgagatcacaatctatgatgccaacaacctgagtacggtgacgctg
atccaagcccatgacagtcccttggcagctctcaccttcaatgcctctggcaccaaactg
gccagcgcttcggagaaaggtactgttatcagagtcttcagtgttcctgagggacagaaa
ctgtttgaattccggcgagggatgaagaggtatgttagcatcagttcattgtccttcagt
gcggatgctcagttcctgtgtgcctccagcaacactgagacggttcatatctttaaactg
gagcagcacagccccagtcaagaggaggagtctcctacatggtcagcatatgtggggaaa
atgttcacagcagccagcacctacttgcccacccaggtgtctgacatgatgcatcaggac
agagcctttgccactgtacgactcaatatgttcggcctaaagaacatctgcgccctggct
acgattcagaagctccctcgcctgctggtggcgtcctcagacgggtatctctacatctat
aatgtggatccacaggatggaggcgagtgtgtccttgtccaaaaacacaggctgtttgac
tccagtgaggagccggtggaacagaaggaagaggagaaaccagaggatatctctccccaa
ccatccagccaatcatatgctgccactgtggcactcccttcgaccccaccctcctccacc
actctcatgggctactctgaggatggtggagcccagaagggcgaggtcatccctgagcat
gaattcgcagaaggtcccgtctgtctggatgatgagaatgagtttccaccagttggcaac
cagagtaactga
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