Lates calcarifer (barramundi perch): 108876019
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Entry
108876019 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03440
Homologous recombination
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108876019
03460 Fanconi anemia pathway
108876019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108876019
03036 Chromosome and associated proteins [BR:
lcf03036
]
108876019
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108876019
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108876019
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
108876019
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
108876019
FA (Fanconi anemia) pathway
Downstream FA components
108876019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA-2_OB3
BRCA-2_OB1
BRCA2
BRCA2DBD_OB2
BRCA2_TR2
Tower
Motif
Other DBs
NCBI-GeneID:
108876019
NCBI-ProteinID:
XP_018520789
UniProt:
A0AAJ7PEJ5
LinkDB
All DBs
Position
LG21:17924167..17937160
Genome browser
AA seq
2910 aa
AA seq
DB search
MDLNMYDAFKGEIWKELGPLDSDWFDVLTAQTFTNEENASDHDDLYPNQEEHFKTPFDKT
AVDSQLFSTPKVFRHSRVVSPATEDEQSFTAEQEKETLPWTATQSPYLFQMSKEGLPGAK
YEGVQPQSQDSFDLLHTSPKTPVSYAKQISESLGAQIHPDISWTSSLNTPPAVPSTLILS
KTDESPRSMSITADENVVFVRTLFPSLSNLSRVGKASPKNNDMPADHQGVVSPEAVQNPE
THNSPQSSLSQSESVWRQKLPDAIQDGEICNTVAGVLDGAEDVLSIFFTNSSSALRKVKT
DRIKRRQLILTKEHDCTSTDMSATKTATSSEHRENNLEPVKLTSSPLLKTGDIGITQWSP
LSLSEIPPCTVDSSCHDNSHATQMENNIVTEQLQSVSGSGQPVRPSLKIIDTGFTKKKRK
FVYTVETSKTQAQGQEMQSPKIDPPTGIPDSGYKLSAKLSGEAPDEADCRSIRENEIQKQ
ENVSEENLRPSVQAKVQDLDMSQLCKDFAQDFSQMLDHSKLHIVTEDTPRNSFSPLACLS
AMKQAKQRARQAKLHQDCDGISNRRHASTTNQNYSITEGTVSDSRFQSAVADITHHSTSF
ILPSSENTSQSQQWTDFKTDIHRTTSFLPTNTGNEKFHMDDISQEAITDAKLPSAQTLGP
CKDRELHKKGTSAQPACGANGNADDINCFPLDSHIYSTSPEKTTVSVPPIHASGFKTASN
KAIQISSANLETAKYLFEENEAERTLSDQPTKRDHDTKDEIGMSNGSLKNIISNSKQPPS
SQENFGDIGCQLTASQKADVTELCTLLEEADSQFEFTQFKTAKAQQHCQDNVTSPQNVDK
ELDPDFLLGIDFDDSFSSDAEKHLAKTVMLDKMTLVSDGKANSEKSKVTSKSTVVSFSSA
MKTENSSTQDVASSSKHICEGSSSNVSAKPKTLDRAGYTEASEQENKNPLMLDVGFKTAV
GNVLRVSKKCLSKARALFADLEQNQTYQKSPDKQNSEGDAKTEQRLVTSINEKDAAESFK
NSKMDTTTCQRGFQMASGKGISISAKAMQEADAFFKDCDISDSNTGMSVKHKKSAERLPG
SVRHKSPQKNVQENFSEEPISEFEKVNAGPVTCHTEVVQHNVEIHSLDFKNRPALTNAVS
LRGNLSSTAKALSSPSCTSSNSTGSSAINELSNGGGFSTASGKKVSVSADAMKRAECLLN
DIHTLEDTNKELKQKGDASRTGHPTSQIHVAPPKNGGFQTASGKGVVISSAALKKAKSLL
SECEAVEDTINLKPTHSKMPIPGPSSRNSGFLAASGKPMALSAEALQRAKAVFSDIDFSA
EITAVSDKRTRDKTHDNAGNSDRIHCGFMTAGGATVGVFQKNLLKATNLLKEFEDSSISA
KAMQEADAFFKDCDIMDRNNGMSVKYEKSSAPVSGSGSEKKCLSNFEQDQRVTNTSKEHG
SGHTEFENLNMGPIVNHENLLHAFKSTPDCTNGKPLSSPLCTSSKNIGSSTFSEFSNSNG
FCTASGKKVSVSDVSMAKAKSLLNESDAFKDTNRELKQKDTFPPQNNGKGAISFAAPKKA
KTLSEYDGVEGEISVKPTHTKMPVSSLTHRNSGFLAASGEPVAFSPEALQKAKALSYSNL
YSAIPRDTQKSDLSKVNYVTRTSNSNLSTARDKDTLAKESAPQPVQPFQSLQEVGCDNEN
LQNSSVRGCISIKEKALTDASKFKEGKITPSWVGNLHDTPREEVANVSGCEVNHTSSSEG
PKYKRTEESSALILQSLNLSGCTETQQKFLAQEALDCTKALLEDESLAGQSLSVTLESVP
LQDNPKSNNKSVEEQKGRGKRSVDDADVIGQPPLKRRLVEEFDRTVDGPRGSTLHPQKCC
PNSVMKDRRAFKYSVSPHPNITRPHRDGKNYLEKTTPTQNSSSGDCRSAHFKMPAFVPPF
LKNVKTDTHKNTVLKDNLRAPSAFVPPFKKQTTVVQENSSKPQEEGKHHHLFVTPSNSNT
YVPPTKKTQSSTDVTSNKSKEDIQAMADTTNDFMMNTQYIPAGCGSEDFAADASRVKDTF
SQSQDTFQNLENVELARDMQDMRLRKKKRQTIRPLPGSLFLTKTSGVSRIPLKAAVNGKP
PARYTPKQLYGYGVHQLVSEITSETAETFRFSLQQFFKLEALIDGGGVQLADGGWLIPSN
DGTAGKEEFYKALCDTPGVDPKLISEEWVYNHYRWIVWKQASMERSFPETMGSLCLTPEQ
VLLQLKYRYDVEIDHSRRPALRKIMEKDDTAAKTLVLCVCGIVSRGQSLNKQSRNGTKTP
QGADAKVEPPSAVVWLTDGWYAIKAQLDEPLTAMLHKGRLAVGRKLIIYGAQLVGSQDAC
SPLEAPDSLMLKICANSSRLARWDTKLGFHRDPRPFLLPLSSLYSNGGPVGCVDITILRS
YPIQWMERKADGGVVFRSARAEEKEERRFSSHKQKAMEILFAKIQTEFENEEKGNNKPKR
RRRTISSQYIASLQDGEELYEAVGDDPAYLEAHLSEHQLATLETYRRSLMDRKQAEMQDR
YQRAIEAEGNDGSCLKRDVTPVWRLCVADSMDQPVRVYQLNLWRPSSDLQSLLKEGGRYK
VYNLTTSDGKKRSGIESVQLTGMKKTQFQDLRASQEWLSACFQPRVSTNFVNLQSPEFQP
LCGEVDLTGYIISIIDGQGSSPAFYVADGRLNFVKVRCFSSFSQSGLEDVVKPHVLLALS
NLQLRGQSTSPTPVVYAGDLTVFSTNPMEVHLQESLGQLRSQVKGQENFFLTAEEKLSHL
VKSDGLSSISSPALQPRTPACTTDRRQDTETSLISQQPSRSLGSFTPVNKKPPAATSSTE
KDTRSLKRRRALDYLSHIPSPPPLSHLGSVASPCVKKTFNPPRRSTTTSTLKAVQTPARK
PVILPMEDEWVNDEELAMIDTQTLRAGDLL
NT seq
8733 nt
NT seq
+upstream
nt +downstream
nt
atggatttaaacatgtacgacgccttcaaaggagaaatctggaaagagctgggaccatta
gactccgactggtttgatgtactgacagctcaaacgttcaccaatgaggaaaatgcctct
gatcatgatgacctctaccctaaccaagaggaacattttaaaacaccttttgacaaaact
gcagtagacagtcagctattttcaacccctaaagttttcagacacagtcgagttgtgtca
cctgcaactgaggatgagcagtcgttcaccgctgaacaagaaaaagaaacactgccatgg
actgcaacacaaagcccatatttgtttcagatgtcaaaagaggggctcccaggtgcaaaa
tatgaaggtgtccagcctcagagtcaggacagctttgatttgcttcatactagcccaaaa
accccggtcagctatgccaagcaaatatctgaaagtcttggcgcacagattcatcctgat
atatcctggaccagttctctgaataccccaccagcagtgccatccaccctgattttatct
aaaactgatgagagtccccgttcaatgagtattactgcagacgaaaatgttgtttttgta
cggacactttttccttctctctccaatttgtccagagttgggaaagcgtcacccaaaaac
aatgacatgcctgccgatcaccaaggtgttgtttcccctgaggcagttcagaatccagag
acccataactccccccagagttcactcagtcagagtgagagtgtttggagacagaagcta
ccagatgctattcaggatggagaaatttgcaacacagtagctggtgtccttgacggagct
gaagatgttctctcgatatttttcaccaacagcagttcagcactgagaaaagtgaaaacc
gatagaatcaagaggaggcaactcattctgacaaaagaacatgactgcacctctactgac
atgtcagccacaaagaccgctacatccagtgagcacagagaaaataacttggaacctgtc
aaacttacctcatccccacttttgaaaactggagatattggaatcacccagtggtctcca
ttgagtttatctgaaattcccccctgtactgtagattcttcttgccatgataacagtcat
gctacacaaatggaaaacaacattgtaacagaacaactgcagagtgtctctggttctggc
cagccagtcaggccatctttgaaaatcatagacactggatttacaaagaaaaagagaaaa
tttgtttacactgtggagacttcaaaaacacaagctcaaggacaagaaatgcagtctcca
aagattgacccaccaacagggattccagattctggatacaaattgagtgccaagctgtca
ggggaagccccagatgaagcagactgtcgcagtatcagggagaacgagatacaaaaacag
gaaaatgtctctgaagaaaacctacgtccctctgtacaagcaaaagtccaagatcttgac
atgtcgcagctctgcaaagattttgcacaagacttcagtcaaatgttagaccacagtaaa
ctgcatatagtaacagaagatactcctcgaaacagcttctctccattggcttgtctgtca
gccatgaaacaagctaaacagagagcaaggcaagcaaaacttcaccaggactgtgatggc
atcagtaacagaagacatgcttctaccactaatcaaaattactccatcactgaaggcaca
gtaagtgatagcagattccagtctgctgttgcagatatcactcaccactcaacatcattt
attctgcctagctcagagaacaccagtcagagtcaacagtggactgactttaaaactgat
atccataggactacttcttttctacctacaaatacaggaaatgagaaatttcatatggat
gatatttcacaagaagctataactgatgccaagctacccagtgctcagacactgggccct
tgcaaagacagagagttgcacaaaaagggcacatcagcacaaccagcctgtggtgcaaac
gggaatgctgatgacattaattgctttccacttgacagtcacatttatagcacttcccca
gagaaaacaacggtttctgttcctcccatccatgcatcaggattcaaaaccgcttcaaat
aaagctatacagatttcctcagccaacctggagacagccaagtatctctttgaagagaat
gaagctgaaaggactttaagtgatcagcccaccaaaagagaccatgacactaaagatgaa
attggcatgagtaatggatcattaaaaaacataatctctaactcaaagcagccaccttct
tcacaagaaaattttggggatatcggttgccagttaacagcttcacaaaaagctgacgtg
acagaactgtgcactctcctggaagaagcagatagccagtttgaatttacacagtttaaa
actgcaaaggcacagcaacactgtcaagataatgtcacctctccccaaaacgttgacaaa
gaacttgaccctgatttccttttgggtatagattttgatgatagctttagttcagatgct
gaaaagcacctggcaaaaactgtgatgcttgataaaatgactttggtttcagatggtaaa
gcaaactcggagaagtcaaaggtcacaagtaaatccacagttgtctcattttcaagtgca
atgaaaacagaaaattcctctacccaagatgtggcttcctcttcaaagcatatctgtgag
ggcagtagcagtaatgtgtcagctaaacccaaaactcttgacagagctgggtacactgaa
gcaagcgagcaggagaacaaaaatcctttgatgcttgatgtaggatttaaaactgcagta
ggaaatgttttgagagtttcaaaaaaatgtctgagcaaagctagagctttgtttgcagat
ttagagcagaatcagacttatcagaaatcaccagacaagcagaacagtgaaggtgatgct
aaaaccgagcagagactggtcacgagcattaatgaaaaagatgctgctgaaagttttaaa
aacagcaaaatggacacaaccacatgtcaaagaggattccagatggccagtgggaaaggg
atttctatttcagcaaaagcaatgcaagaggcagatgccttcttcaaagactgtgacatt
agtgacagtaacactggcatgtcagtaaaacataaaaagagtgcagaacgtttacctgga
agtgtcagacataaaagccctcagaaaaatgtccaagagaacttttctgaagaaccaatc
agtgaatttgaaaaagtgaatgctggaccagttacatgccatacagaggttgtgcagcat
aatgtggagattcacagtttggattttaagaatagaccagctttaacgaatgctgtttct
ctccgtggaaacctgtcttccactgcaaaggcactttcttctccctcatgcacgtcatca
aatagtactggctcctctgccattaatgaattgagcaatggaggtggattctccacagcc
agtgggaagaaagtatctgtgtcagctgatgcaatgaaaagagcagagtgtcttttgaat
gacattcatacacttgaggacacaaacaaagaactgaaacagaaaggagatgcttcaaga
acaggtcatcccaccagtcagattcacgttgcaccacctaaaaatggtggatttcagaca
gctagtggcaaaggagttgtcatttcatccgcagctctcaaaaaagcaaaatcgttgttg
agtgaatgcgaagcagttgaggataccatcaatttaaaaccgacacattccaagatgccc
attcctggtccttcatccaggaatagtggatttcttgcagccagtggtaagcctatggct
ctttcagctgaggccctccagagggcaaaagcagtcttcagtgacattgatttcagtgca
gagatcacagctgtttcagacaaaagaacccgtgacaagacacatgacaatgctggaaat
tcagacagaatacattgtggtttcatgactgcagggggagcgactgtcggtgtgtttcag
aaaaatctgttgaaagcaacaaaccttttgaaagaatttgaagatagttctatttcagca
aaagcaatgcaagaagcagatgctttcttcaaggactgtgacattatggaccgtaacaat
ggaatgtcagtaaaatatgagaaaagttcagcacctgtgagtggaagtggcagcgagaag
aaatgcctttcaaattttgaacaagatcaaagggtgaccaacacttctaaggagcatgga
agtgggcacactgaatttgaaaatttgaacatgggacccattgtaaaccatgaaaacttg
ctgcatgcttttaagagcacacctgattgcaccaatggaaaaccactttcttccccattg
tgcacatcatcaaagaacattggttcctctaccttcagtgaatttagcaacagtaatgga
ttctgcacagccagtggaaaaaaggtatctgtgtcagatgtttcaatggcaaaagcaaag
tctctattgaatgaaagtgatgcatttaaggacacaaacagagaactgaaacaaaaagac
acttttccaccacagaataatggcaaaggagctatttcatttgcagctccgaagaaagca
aaaactctaagtgaatatgacggagttgagggtgaaatcagtgtaaagccaacacatacc
aagatgccagtttctagtttaacgcacaggaacagtggatttcttgcagccagtggtgag
cctgttgcattttcacctgaggccctccagaaagcaaaagccctctcctattcaaacttg
tactcagcaatcccacgtgacactcagaagtcagatctgtcaaaagtgaactatgtgaca
agaacttcaaattctaatctcagcacagccagagacaaggacacgcttgctaaggaaagt
gcccctcagccagttcaaccctttcaatctttgcaagaggttggctgtgacaatgaaaat
ctacaaaattcaagtgtacgtggttgcatttctatcaaagaaaaggcacttacagatgca
tctaagtttaaagagggcaaaattaccccgtcatgggtgggcaacctccatgacactccc
agagaggaagtggcaaatgtgtcaggctgtgaagtaaatcatacaagcagcagtgaggga
cctaagtacaaaaggacagaggagtcctcagctctaatacttcagtcacttaacctcagt
ggctgcactgaaacccagcagaagtttcttgcccaggaagctcttgactgcactaaagct
ttgttagaggatgaaagtctagctggccaaagtctctcagtgactttagaaagtgtgcca
ctgcaagataaccccaaatctaacaacaaatctgtggaggaacagaaaggcagaggaaaa
agatcagtggatgatgcagatgtgattggtcagcctcccctgaaaagacgattagtggaa
gaatttgacaggactgtggatggtccaagaggttccacactccacccacaaaaatgttgt
ccaaatagtgtaatgaaagacaggagagctttcaagtacagtgtctctcctcatccaaac
atcacaaggccacacagggatggaaaaaactatttggaaaagacaacaccaacacaaaat
tcatcctcaggagactgcagatcagcacatttcaagatgccagcatttgttcctccattc
ctcaagaatgttaagacagacactcacaagaatacagtcctcaaggacaacttaagagca
ccttcagcatttgttcctccattcaaaaaacaaacaacagttgtccaagagaactcctct
aaaccacaggaggaggggaaacaccaccatctctttgtcacaccctctaacagcaacact
tatgtaccccctactaaaaaaacacaaagtagtacagacgtaaccagtaataaaagcaaa
gaagatattcaggccatggctgacactacaaatgattttatgatgaatactcaatacatt
cccgctggctgtggatcagaggactttgctgcagacgcatcacgtgtgaaggacacattt
tcccaaagccaagacacatttcagaatcttgaaaatgtggagctggcacgggatatgcaa
gacatgagactcaggaaaaagaagcgccagacaattcgaccacttccaggcagtttgttt
ctaaccaaaacctctggggtttcgaggatcccattaaaagctgcagtaaatggaaagcct
cctgcaagatacaccccaaaacagctgtatggttatggagtgcatcaacttgtgtctgag
atcacaagtgagactgcagaaacctttcgcttcagtttacaacagttcttcaagctggaa
gcacttatagatggaggtggtgttcagcttgccgatggaggatggctgatccccagcaat
gatgggactgcagggaaagaagagttttataaagcattatgtgacaccccaggtgtggat
cctaaactgattagcgaggagtgggtgtacaatcactacagatggattgtgtggaagcag
gcctccatggaaagatcttttccggaaacaatgggaagcctctgtctcacaccagagcag
gttctcctacagcttaaatacagatatgatgtagagatagaccacagccgtcggccagct
ctgagaaagatcatggaaaaggacgacacagcagccaaaaccctggttctctgtgtttgt
gggattgtctctaggggccagtccctaaacaaacagagtcgcaatggcaccaagactcca
caaggtgctgatgccaaggttgagcccccatctgcagttgtttggctgacagatggatgg
tatgccattaaagctcagctggatgaacctttgactgccatgcttcacaaaggtcgactg
gctgtcggcaggaagttgatcatctatggggctcagctggtgggatcacaagatgcttgc
tcccctctggaggcacctgactctctcatgttaaagatttgtgccaatagcagcagactg
gcaaggtgggatactaagctgggttttcacagggatcccaggccattcctacttcctctc
tccagtttgtacagcaatggagggccagtaggatgtgtggatattaccatactgagaagc
taccccatacagtggatggagaggaaagcagacggaggcgttgtgttccgttctgctcgt
gcagaagagaaggaggagagacgattcagcagccacaaacaaaaagccatggagatcctc
tttgccaagattcaaactgaatttgaaaatgaggagaaaggtaataacaaacctaaacgc
agaagacggacaataagcagtcagtatattgccagtctgcaagatggagaggagctctat
gaagcagtgggggatgacccagcttaccttgaggctcatttgagtgaacatcagctagca
acgctagaaacatacaggcgctctctgatggacaggaagcaggctgaaatgcaggatcga
taccagcgtgctatagaagcagagggcaatgacgggagctgtctcaaacgagacgttaca
cctgtgtggagactctgcgttgctgactccatggaccagcctgtccgtgtttaccagttg
aacctttggcggccttcctcagatcttcagtctttactgaaggaaggcggtcgatacaaa
gtctacaacctcaccacttcagatggaaagaaacgcagtggaattgaaagtgttcaactc
actgggatgaagaaaacacagtttcaggacttacgggcttcccaggaatggttgtcagca
tgttttcagccaagggtttctaccaattttgtgaatcttcagagcccagaattccagccg
ctgtgtggagaggttgatctcacaggatacatcattagtatcatagatggacagggttcc
tctcctgcattttatgtggctgatggaagactgaactttgttaaagtgcgctgtttcagc
agcttttctcagtctggcctggaggatgttgtaaaacctcatgtgctgctggctctgagc
aacctgcagcttagaggtcagtccacatctcccactcctgttgtgtacgctggagatctg
accgtcttctctacaaaccccatggaggttcatctacaggaatccctcggccaactcaga
agccaggtcaagggtcaggagaacttttttctaactgctgaggagaagctttcacattta
gtcaagtctgatggcttgagctccatctcttccccagctttgcaaccacgaaccccagct
tgtacaacagacagaagacaagacactgagacaagtctaatatctcagcagccaagcaga
agccttggctccttcacacctgtcaacaagaaacctcctgcagcaacttcttcaacagag
aaagacaccagaagcctgaagaggagaagagctctggactatctgtctcatatcccgtct
ccaccacctctttcccatctgggctcagtggcttctccatgtgtaaaaaagacattcaac
ccccctcggaggtctacaacaacaagcactttaaaagctgtgcagactccagctcgcaaa
cctgttattttaccaatggaagatgaatgggtgaatgacgaggaactggcaatgattgat
actcaaacattgcgtgctggtgatttactgtag
DBGET
integrated database retrieval system
