Lates calcarifer (barramundi perch): 108876021
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Entry
108876021 CDS
T04895
Name
(RefSeq) short transient receptor potential channel 4
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108876021
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108876021
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
Ank_5
PKD_channel
YVC1_C
BAR_4
Motif
Other DBs
NCBI-GeneID:
108876021
NCBI-ProteinID:
XP_018520795
UniProt:
A0A4W6DXX6
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Position
LG21:complement(18276623..18290904)
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AA seq
917 aa
AA seq
DB search
MSQLYYRKTDNSSYRDRIPLRIVRAESELSALERAYLGAVEKGDYASVKQALEEAEIYFR
ININCIDPLGRTALLIAIENENLEIIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PRGEKQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKLLVQRGVSIPQPHAVRCNCME
CVSSSDVDGLRHSRSRLNIYKALSSPSLIALSSEDPFLTAFQLSWELKELSTVENEFKSE
YEELSHMCKQFAKDLLDQTRSSRELEIILNYRDDINPLLDENSNDLARLKLAIKYCQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAAKLVTCFLIGLLFPLLSIFYLISPKSRYGLFIR
KPFIKFICHTASYLTFLFLLFLASQHIAAAERDFQGPPPTTVEWIILPWVLGFIWTEIKQ
MWDSGFQEYIDDWWNLMDFIMNSLYLATIALKFVAHVKYSGCKPRDSWDMWHPTLVAEAL
FAIANIFSSLRLICLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YVTREKDCQGIRCNVQNNAFTTLFETLQSLFWSVFGLISLYVTNVKPDHQFTEFVGTTMF
GTYNVISLVVLLNMLIAMMNNSYQHIADHADIEWKFARTKLWMSYFEEGGTLPSPFNIIP
SPKSVYYLIGWIKTYLFRRPSIKRLDTFETLGRRAAENVRLNHEYQEVLRNLVKRYVAAM
IRDAKTAEGLTEENFKELKQDISSFRYEVLGMMKGKSHGRASKVAGSTLAYPGNPFKYSP
KLLTDEPEQKLDVFDVITTTLHSGAANTTRSVCSDRLANGSVVPSSTGQIQNELPRDVSD
AGSLQRQSRLPSQRCDEIFSLSEEDSLGSSGQNQEQLQTEKLIVDVLQKVENSLMENEHS
CKEHIKEVKNGPKKYKN
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagctatattatcggaaaacggacaactcctcatacagggaccgcatccctctg
cggattgtgcgggctgaatctgagctctctgccctggagagggcctacctgggggctgtc
gagaagggggactatgccagtgtgaaacaagccctggaggaggctgagatctatttcaga
atcaacatcaactgcattgaccccctgggacgcaccgccctactcattgccattgaaaat
gagaacctggagatcattgagctgctgctcagttttaatgtgtacgtgggtgatgccctg
cttcatgccatccgtaaagaagtggtgggggctgtggagctgctgctcaaccacaagaag
ccacgtggggaaaaacaggttccaccaattctgttagacaaacagttttcagacttcacc
ccagacatcactccgatcatcctcgcagcccataccaacaactatgagatcatcaaactg
cttgtgcagcgaggtgtttccatacctcaaccacatgctgtgcgttgcaactgcatggag
tgcgtgtccagttcagacgtggatggcctgcgtcactctcgctctcgtctcaacatctac
aaggccctttccagcccgtctctcatcgccctctccagcgaggatcctttcctcacggct
tttcagctcagctgggagctgaaggaactcagtacagtggagaacgagttcaagtcagag
tacgaggagctgtctcatatgtgtaagcaatttgcaaaagacctcctggaccagaccaga
agctctagagagttggaaataatcctcaactaccgtgacgacatcaatcctctgctggat
gagaactcaaatgacctggcacgactgaagcttgctatcaaatattgccagaaagagttt
gttgctcagcccaactgtcagcagctgctggcgtctcggtggtatgatgagttcccaggc
tggaggaggcgtcactgggcagcaaagctcgtcacatgtttcttgattggcctcctcttt
ccactgttatccatcttctacctgatctctccaaagagccgctatgggttattcatccgt
aagcctttcatcaagttcatttgtcacactgcttcctacctgaccttcctcttcctgctc
ttcttggcctcacagcacatagctgccgcagagcgggactttcagggcccgccacccacc
acagtggaatggattatcctaccttgggtgcttggttttatatggactgagatcaaacag
atgtgggatagtggtttccaggagtacatagatgactggtggaacttaatggacttcata
atgaactccttgtatcttgcaaccattgctctgaagtttgttgcccatgttaagtacagt
gggtgcaaacccagagacagctgggatatgtggcacccgactttggtggcagaggcattg
tttgctattgccaacatctttagctccttacgcctcatctgcctgttcactgccaactct
catcttgggcccttacagatttcactgggtcgcatgctcctggacatcctcaagttcctc
ttcatctactgtcttgtgcttttagcctttgccaatggcctcaaccagctgtacttttat
tatgtaacacgcgagaaagattgccagggtattcggtgtaatgtgcaaaacaacgccttc
acaacgctgttcgagacactacagtcattattttggtctgtatttggcctgatttccctc
tatgttaccaatgtgaaaccagaccatcaattcactgaatttgtgggcacaacaatgttt
ggcacatacaatgtgatctccttggtagtgcttctgaacatgctaattgcaatgatgaac
aactcctaccagcacatagctgatcatgcagatatagagtggaaatttgcaagaacaaaa
ttatggatgagctattttgaagaaggggggactttgccatctccatttaatataataccc
agtccaaaatcagtgtattatctaattggatggataaagacttatttgtttaggagacct
agcataaaaaggcttgatacctttgaaacattggggagacgtgcagctgaaaatgtaaga
ttaaaccatgagtatcaggaggttttgaggaaccttgtgaagcgctatgtggccgcaatg
atcagagatgccaagacagcagaagggttgacagaggagaatttcaaggagctgaagcag
gatatctcgagcttccgctatgaagtcctgggaatgatgaagggtaaatctcatggtagg
gcaagtaaagttgcaggctccaccttggcataccctggaaacccattcaaatactctccc
aaactccttactgatgagcctgaacagaagctcgacgtgtttgatgtgatcactaccacc
ttacatagtggagctgccaacaccacccgctctgtttgctctgataggctagccaatggt
tcagttgttccatccagtacaggacagattcaaaacgagctacccagggatgtctcagat
gctggttccctccagagacagagcagactcccctctcagagatgtgatgaaatattttca
ttgtcagaggaagactcattgggatccagtggacaaaaccaagaacaacttcagactgag
aaattaattgtggacgtcttacaaaaagtagagaatagtttaatggagaatgaacattct
tgcaaagagcacattaaagaagtgaaaaatgggccaaaaaaatacaaaaattaa
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