Lates calcarifer (barramundi perch): 108876058
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Entry
108876058 CDS
T04895
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108876058
03041 Spliceosome [BR:
lcf03041
]
108876058
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108876058
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
108876058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Catalase-rel
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108876058
NCBI-ProteinID:
XP_018520871
UniProt:
A0AAJ7LDV6
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All DBs
Position
LG21:18525944..18545467
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AA seq
761 aa
AA seq
DB search
MDAVNAFNMELFSMIDMKPPISRAKMMSVTKSAIKAIKLYKHVVQIVEKFIKKCKPELKV
PGLYVVDSIVRQSRHQFGVDKDVFGPRFLKNFTDTFQNLYRCPEDDKSKIVRVLNLWQKN
GVFDMDIIQPLMDMANGAIVPPSVLEVSVNPQPEIQPPITSASAVPVVPQLPNPDALAAV
AQLFQSPHGQELQRMLQNFQQADKTLAATIANNIPNPPQMPVAQLNLYSAHTEKKSSLAE
KLLDRFDYDDEPEDITPKELSAQSQCIPENLFNQFAGQMSNAEIAHPHMMVQTGGIEHGG
GISHGDHHMMPDGYHSINEAYSQSRGNSREDSSMRRESRHRGYGRRSGSRSGSRSPRRRR
SRSSSRSRRSRHRRSRSRSRERRWRSRSRSQDRSEREKDRERRQKGLPSLKSQTLSVCST
TLWVGQLDKKTQQSDVMSLLEEFGQIESINMIPPRGCAYIVMVHRQDAYTALNKLSRGSY
KVNQKPVKIAWALNKGIKPAHKKFWDVERGVTYIPWNKVKVEELESYREGGMLDTETLNP
EWNNAKDFSKQTAVNGALESVPADGTVTAHIQMPPVQQAASIGSPPAFPGSIMLSPTAMP
PGGAPFIPTEFDPTKLAQGSVNLPEDSSMDSKREKGTPSDTGSDNQLGSPGAPVMTLPGP
AVMQGPRPGMPPLQPPPGMPSPHLPPFLSPPNMPHMPPQMMPGGSMFPPDRFRMPMPFPP
RGPPFHRHPSMGPEGMDDREGRHFRNGRPGFGCPPFHRGRW
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagtgaacgcgttcaacatggagttgttctccatgattgacatgaagcctcca
atatcccgtgctaaaatgatgtctgtaacaaaatcagctatcaaagctattaagctttac
aaacatgtcgtccagattgttgaaaagttcatcaagaagtgcaagccagaattaaaagtc
cctggtttatatgtagttgactccattgtccgacagtcacgccatcagtttggtgttgac
aaggatgtatttgggcccagattcttgaagaacttcacagataccttccaaaatctttac
cggtgcccagaggatgataagagcaaaattgtccgtgtcctgaatttatggcagaagaat
ggtgtgttcgacatggacatcatccagcctctgatggatatggctaatggtgccattgta
cctccctctgtactggaagtgtctgtgaaccctcaaccagagatacagccaccaatcaca
agtgcctcagctgtgcctgttgtacctcagctacccaatcctgatgctttagctgctgtg
gcacaactgtttcagtctccccatggtcaggagctgcagaggatgctccagaacttccag
caggctgataagaccctggcagccaccattgcaaacaacataccaaacccacctcagatg
cctgtggcccagctcaacttgtacagtgcacacacagaaaagaagagctctttagctgag
aaactccttgatcgttttgactatgatgatgaacctgaggatataactcccaaggaactg
agtgcccagtcacaatgcatccctgaaaatctttttaaccagtttgctggtcagatgtcc
aacgcagagattgctcatccacatatgatggtacagactggtggtatagagcacggtgga
ggaataagtcacggtgatcatcatatgatgccagatggataccattccataaatgaggct
tattcacaatcgcggggaaattcaagagaagactcaagtatgagacgggagagtagacac
agaggctatggcaggagatcaggatccagatctggttccagatctcccagaagaagaaga
tcaagatcttcatcgcggtctagaaggtcaaggcatcgacgttctcgttctcgctcgaga
gaaagacgctggagatctcgctctcgttctcaagacaggagtgaaagagagaaggacagg
gagcgtagacagaaaggtcttcccagcctgaagagccaaacacttagcgtttgcagcact
acactttgggttggacaactagacaagaaaactcagcagtctgacgtgatgtcccttttg
gaagagtttggccagattgagtccatcaatatgattcctccgaggggttgtgcctacatt
gttatggtacacagacaagacgcctatacagctttgaacaagctcagtagaggttcatac
aaagtcaatcagaaaccagttaagattgcttgggctttgaacaaaggtataaagccagca
cacaaaaagttctgggatgtggagcggggagtcacctacattccctggaacaaagtcaaa
gttgaagagttggagagctatcgggaagggggtatgctggacacagagacactcaatcca
gagtggaataatgccaaggacttcagtaagcagacagctgtaaatggagcattggaaagt
gtaccagcagatggaacggtcactgctcacattcagatgccaccggttcaacaggcagca
tccattggaagtccacctgcttttcctggctccatcatgctgtcccctacagccatgcct
ccaggaggtgctccattcatccccactgagtttgaccccacaaagttggcacaagggagt
gtaaatcttccagaggattccagcatggattctaaaagagaaaaaggcacaccctcagac
acaggcagtgacaaccagcttggctctcctggagcaccagtgatgaccctgccaggccca
gcagtcatgcagggtcccagaccgggtatgccacctctgcagcctcctcccggcatgcca
agtcctcacctacctccattcctctcacctccaaatatgccacacatgcccccacaaatg
atgcctggaggatccatgtttccaccagacaggttcagaatgcccatgcccttccctcct
cgaggccctcctttccatcgacatccctccatgggaccagagggcatggatgacagggaa
gggaggcatttccgaaatgggaggccagggttcgggtgcccacctttccacagaggaagg
tggtag
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