Lates calcarifer (barramundi perch): 108876130
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Entry
108876130 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin 88
KO
K14318
nuclear pore complex protein Nup88
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108876130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108876130
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108876130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
HTH_32
DUF6341
STX6_10_61_N
Bcr-Abl_Oligo
Motif
Other DBs
NCBI-GeneID:
108876130
NCBI-ProteinID:
XP_018520977
UniProt:
A0AAJ7LFS1
LinkDB
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Position
LG21:20475787..20478426
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AA seq
719 aa
AA seq
DB search
MAAFGAERWLNDLPNHSIFKKIREKLESELNTNERGIAKNLTFCLGGDLFVWDDADRVFY
TTNLRQLSPDESRSSGNYQTLLCINPPLFEVCQVLLSPTQHHVALVGQRGISVLELPQRW
GKRSEFEGGRSKINCKTIPVAERFFTSSASVNLRQAAWYPSETDEPHLVLLTSDNTIRFY
SLKSPQTPATILPLSQSEDDNSAHPPVCSYAASLGEIAVAFDFGPVSSPPRQLAARCSKE
QLVYPLYILYENGETYVSYTSQANGVNLSKPVGPLPMYPAAEDNYGYDACAILCLPCVPS
ILVIATETGTLYHCVVLESEEEEEQGLVEKWIQGTEAVPALYVFECVELELTLKVATGED
EEPQEFDFTCPIRLHRDPLCQHRYHCTHEAGVHSVGLIWVNKLQKFLQSNEEDKDSLQEL
AAEKRCIVEHILCTRPLLTSQSAPVRGFLIVSDLSLGATMMCITSTYECILLPLLSSIRP
PSPPLLCSYPGPGSVSSPLRGLANDSFEQHIRNILARSSTNPLVLKAGDKDSSPPPPECL
QLLSRATQVFREEYILKQDLAREEMQRRVKLLTGQKNKQLEELALCREERKSLREAAERL
ADKYEDAKYRQETIMNRVKKVLGSQQSRLPILSNSEKDMKKELQTISDQLKHLDNCIRQV
NMKMEYQKTQVDKDVPAARTTVSLNAQQKKVVQDVLREQGQQIGDMMKQLKDIKNHFNF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggcggctttcggcgcggagaggtggctaaatgacttaccaaaccatagcattttcaaa
aaaatacgcgagaagttggaatccgaactcaacacaaatgaaagagggatcgctaaaaac
ctcaccttttgtttgggtggggaccttttcgtgtgggacgacgcagaccgcgtgttttac
accaccaacctgagacagttgagcccggacgagagtcgcagtagcgggaactatcagacg
ttgctgtgcatcaaccctcctctcttcgaggtgtgccaggtgttgctgagtccaacgcag
caccatgtcgcgctggttgggcagcggggcatatctgtgctggagcttcctcagcggtgg
ggcaagaggtccgaattcgagggcgggcggagcaaaatcaactgcaagaccattccggtg
gcagagcgctttttcaccagctcagcgtcggtgaatctgcggcaggcagcttggtacccc
agcgagactgacgagccccacctggtgctcctcacgtccgacaacactatcagattttac
agcttgaagtcgcctcagaccccggccacaatcctgccactgtcgcagtcggaagatgac
aacagtgcccatcctccggtctgctcctatgcagcatctcttggcgagatagcagtggcg
tttgacttcgggccggtttcgtccccccctcggcagctggcagcacggtgttccaaagag
cagctggtctatcctctgtacatcctctacgaaaatggggagacttatgtgagctacacg
agccaggcaaacggtgtgaatctaagtaaacccgttggacccctccccatgtatcctgca
gcagaagataactacggttatgatgcttgtgccattctctgcctgccatgtgtgcccagt
atcctcgtgattgccacagaaacaggtacgctgtatcactgtgtggtgctggagtctgaa
gaagaggaggagcaggggctagttgaaaagtggatccaaggcacagaggcagtgccagct
ctctatgtgtttgagtgtgttgaactagagctcaccctcaaagtagccacaggagaagac
gaggagcctcaagagtttgatttcacctgcccaatcagactgcacagagaccccctgtgc
cagcacaggtatcattgcacccatgaagcaggagtgcacagtgtggggctaatctgggtc
aacaagctccagaagttcctccagtcaaatgaggaggataaggacagcctccaggagctg
gctgctgaaaagcgctgtattgtagagcacattctttgtacaaggccactcctaacaagt
cagtcagctccagttcgtggctttttgattgtgtctgatctttccttgggtgccaccatg
atgtgcatcaccagcacctacgagtgcatcctgttgcccctgttgagctctattcgccct
ccctcgcctcccctgctctgttcctatccaggtccaggctccgttagctctcctctgcgt
gggctggccaacgactccttcgagcagcacatccgcaacatcctggcacgtagctccacc
aatcctctcgtacttaaggctggggacaaggactcgtcaccaccccctccagagtgtctg
caactcctcagcagagccacacaggtcttccgtgaggaatacattctcaagcaagacttg
gcccgtgaagagatgcaaagaagggtaaaactcctgacaggccagaagaacaagcagctg
gaagagctcgctctatgcagggaggagaggaagagtctgagagaggcagcagagaggttg
gctgataaatatgaagatgcaaagtatcgccaggaaaccattatgaacagggttaaaaaa
gtgctgggcagtcagcaaagccgactgcccatactgtcaaacagtgaaaaggatatgaag
aaggagcttcagaccatcagcgatcaactgaaacacctggacaactgcatcagacaggtg
aacatgaagatggagtaccagaagacacaagtggacaaggacgtgcctgcagccaggaca
acagtctcgctcaacgcccaacagaagaaggttgttcaggatgtcctcagagaacaggga
caacaaattggtgacatgatgaagcaattaaaagacatcaaaaatcatttcaatttctaa
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