Lates calcarifer (barramundi perch): 108876139
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Entry
108876139 CDS
T04895
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04517
IgSF CAM signaling
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108876139
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108876139
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108876139
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108876139
Intermediate filaments
Intermediate filament-binding proteins
108876139
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
Helical_needle
CREPT
PH_4
Motif
Other DBs
NCBI-GeneID:
108876139
NCBI-ProteinID:
XP_018520991
UniProt:
A0A4W6D0X6
LinkDB
All DBs
Position
LG21:21374027..21453210
Genome browser
AA seq
2706 aa
AA seq
DB search
MANASPDLDNADAQRQLNNNNRPISSGFWETECTSSKLFECSRIKALADERDAVQKKTFT
KWVNSHLARVSCRISDLYNDLRDGYMLTRLLEVLSGELLPRPTRGRMRIHCLENVDKALQ
FLKEQRVHLENVGSHDIVDGNHRLTLGLIWTIILRFQIQVIKIETEDNRETRSAKDALLL
WCQMKTAGYPEVNIQNFTTCWRDGLAFNALIHRHRPDLIEFHKLTRSNATHNLQQAFNIA
EQHLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALIVEGKRVGKVLDNCIEAE
KIINRYEALASDLLDWIEKTIAVISNQKFANSLTGVQQQLQAFTTYCTIEKPIKFQEKGN
LEVLLFTIQSKLRANNQKPYVPHDGKLISDINKAWERLEKAEHERGVALRKELIRQEKLE
LLAQRFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADIASYEERIGVV
VELAAEMEAEGYYDIRRILARKENILGQWGLLKELVAGRRTRLEKNLALQKTFQDMVYMI
DWMEDTQVQLLSKDFGKHLLEVDDLLQKHSLQEADIAVQAERVETLNTAALKFTTIEGYQ
PCDPQVICNRVNHVSSCLEELKQLAAKRRAELEESRQLWAFFQELEESEAWIREKSSILG
AQGYGKDLSSVLRLLQKHKTLAGELLAHRSLLQNTMKRGKQILSEKSFGTAGIQERIMEV
KGEWKRLEDQAAQRLGHLQEALNFFQFSTETDDLVAWLQDAYRLVSSEDFGHDEYSTQSL
LKKHRGVSEAVDKHRLHVVALRKHMVALPLQYREQEEVQVRMGEVEQLYTEVAEVAVLRQ
QWLHDALAVYRMFSEVNACELWIDEKEQWLDKMEIPERLEDVEVVAHRFESLDQEMNSLM
GRILDVNQIVQQLLDGGHPSSTEVRGCQDHLNSRWNTIVELVEQKKDQLDSMLRLQNYLL
ECAEIKSQIQDKRKAIDATQYVGSDLGGVLALQRRLSTMEGALSVLEPKLLHLQEEAEHL
ATAHPGRAMEVLVPFDGISVEWEELKHTLQGCEDSLMVASRLQSFIQDLDSFLTWLVQTQ
TSAASDQLPNDLEEAERLINKHAALKEEIGRYEEDYERLQAMNELLESEEAPLPQAALQQ
WLQKLDVGWNKLLEMWESRREVLVQAHIFHLFLRDVKQAESFLNNQESALAHVELPTTVE
TVEAAIKKHKDFTTTMELNLHRIKAVIEAGESLISQSNIYSERIRERIDTLANRGNQNRE
LAQQWLEKLNDQWELQRFLQDCHELGDWVCEKMLMARDSSRDETQKLHKKWLKHQAFMAE
LAQNKEWLDKIEKEGQHLIQEKPELSPVVRKKLEEIRECWQDLESTTQAKARQLFEANKA
DLLVQSYESLDQRLGQLEGQLAYVDQGQDLTTVNKQLKKLQTMETQMEEWYKEVGQLQVQ
AASIPQQTQIKETVAGRQAAVEARMVRLIEPLKERRRILLASKEVHQVGRDLEDEILWVQ
ERLPMAMSQEHGSTLQAVQQLMKKNQTLQRELQGHRSRIEDVLERAGIIASIRSPEADCV
RAGHDQLAQLWSLLWAETERRQLVLDAMYQAQQYYFDTAEVEAWLSEQELHMMNEEKGKD
EPSTLQLLKKHLVLEQTIEDYAETIGLLSQQCRQLLEMGHPDCEHISKRQSQIDRLYVSL
KDLVEERKSRLEQQYWLYQLNREVDELEQWIAQKEVVASSPELGQDFEHVTVLQEKFTEF
ASETGSVGQERVTAVNQMVDELIDYGHSEAATIAEWKDGVNEAWADLLELMETRAQMLAA
SHQLHKFFSDCREILTQIEDKHRRLPEVRARQGSTANTSTLQRLLHSFEQDIQLLVTQVR
QLQESAAQLRTVYAGEKAEAIACCEHEVMQGWKELLTSCEECRVQITTETDKLRFFGMVR
DQIMWMDSIICQIGTGEKPRDVSSVEVLMNYHQSLKSEVEARSRSIMECIEMGKTLLAAR
NPAAEEIKEKLDKVVAKQRELSEKWDKHWEVLQQLLEVHQFAQDAVVAEAWLTAQEPFIN
SSELGGSVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTTVEKLKAEQSKLPPTPLLGRK
VFLDPQDAAPSPATLPRLPISPVMRQTIYEQNEASSPPSPSPATPTPSPSSVVRRLGSTV
ANYTPVMNGSSYRHTLEARHGGVVGVAAGLGQPALSSIASIATAAMLVSANQVREGASTA
RDQATKVMSHLQPVQAARELEAKSSPYLRQPKIKHMDDAVTPLLVASRLEKVRERGRERE
IMMGEIGTERAEVAVMAEVVLQEPSRERLHSEPTRGPRGSRTDPLGHAEPQVQTHTYHRD
HRIERQLSSEQLIQARRDELPQEVWREQAERRERRTLERQTSSEQEGHGGHEGRRRERDR
HRLERQESSEHDTGKEHSDRRSGGGEKRSTLAEIVEQLQEREAAQARGEVPRLPNGLPEK
SSRPDRPRARDRPKPRRRPRPKEPGETTRRSRSAPAQSSPAVPQPPTHTAHHEGFLFRKL
DIESLKKSTNRSWVNLYCVLNKGEMGFYKDAKNTTTPYNNEPLLSLSHCHCDVTNGYKKK
KNVFTLKTKDGSEFLFHAKDEEDLKAWVTNITTSISEHEEIAKWGQPQPTTSSTDEGTRR
DGSKADNRSERGGERSDRADRIERADKEREKEREREKERERGERSERSDKGGKSDAKRSE
KSGKKK
NT seq
8121 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgcctccccagatctggacaacgcggatgcccagcgccagctcaacaacaac
aaccgaccaatcagctctgggttctgggagacagagtgtaccagctccaagctgttcgag
tgctcccgcatcaaggccctggcagatgaacgagatgcggtgcagaagaagacttttacc
aagtgggtcaactcgcatctggccagagtgtcctgtcgcatatctgacctgtacaacgac
ctgagagatggatacatgcttaccagactgctggaggtcctcagcggagagctgctgccg
aggcctactcggggtcgtatgcggatccactgcctggaaaacgttgacaaagccctgcag
ttcctcaaagaacagagggttcacctggaaaatgttggttcccatgacattgtggatgga
aaccaccgcctcactctgggccttatctggaccattattctacgcttccagatccaggtg
atcaaaatagagacagaggacaacagagaaactcgctctgccaaggatgccctgctgctc
tggtgccagatgaagaccgcagggtaccctgaggtcaatatccagaacttcaccacttgc
tggagagacggccttgcctttaatgccctcatacacagacacagacctgacctgatagag
ttccacaagctgacacgatccaatgcaacccataacctccagcaagccttcaacatcgct
gagcagcacctgggcctcaccaaactcctggaccctgaggatgtgaacacagagaaccca
gacgaaaagtccatcatcacctatgtggtctcctactatcactacttctccaagatgaaa
gctcttattgtggaaggcaagagggttggcaaggtactagacaactgtattgaggcagag
aaaatcatcaaccgctatgaggctttggcatcagatctgctggactggattgagaagacc
attgcggtcatcagcaaccagaagtttgctaactcactgaccggagttcagcagcagctt
caggccttcacaacctactgcaccatagagaagccaatcaagtttcaggagaaggggaat
ctcgaggtccttctcttcaccatccaaagcaaactcagagccaacaaccagaaaccctat
gtgcctcacgatgggaagctcatctcagacatcaacaaggcctgggagagactggagaag
gcggagcacgagaggggcgtggctctgcgcaaggagctgattcgtcaggaaaagctggag
ttgttggctcagcgctttgaccataaaaccaccatgagacaagcctggctcaacgaaaat
cagcgacttgtatcacaggacaattttggctacgacctaccagcagtcgaagcagcaatg
aagaaacacgaggccatcgaggcggacatagcctcgtatgaagaacgaattggagtggtg
gtggaacttgcagcagagatggaggcggaaggatactacgacatccggcggatcttggca
cgcaaggagaacatcctggggcagtggggtctactgaaggaactggtggcagggaggaga
acccgtctggagaagaacctggcactgcagaagacttttcaggacatggtctacatgatc
gactggatggaggacacacaggtccagctgttgtcaaaggactttgggaagcatcttctg
gaggtggacgacctgcttcagaaacacagcctgcaggaagctgacattgctgtacaggct
gagagggtcgagaccctgaacacagctgctctgaaattcaccacgatagagggttaccag
ccgtgtgacccgcaggtgatctgtaaccgtgtcaaccatgtctcttcttgtctggaggag
ctgaaacaactggcagctaaaagacgagctgagctcgaggagtcgagacagctgtgggcc
ttttttcaggagctggaggagtcggaggcctggatcagggagaagagctccatcctggga
gctcagggttatgggaaggacctgagcagtgtactgaggttacttcagaaacacaagact
ctggctggagaactgctggctcaccggtcgctgctgcagaacaccatgaagcgaggaaag
cagatcctgagtgagaagagctttggcacagctgggatccaggagcgcatcatggaggtg
aagggcgagtggaagcgactggaggaccaggcggcgcaacgtctcggccacctgcaggag
gctctcaactttttccagttctccacggagacagacgacttggtggcctggctgcaggat
gcttaccgcctggtctccagcgaagacttcggacacgacgagtactctactcagtcactg
ctcaagaaacacagaggggtcagcgaggccgtcgacaaacatcgtctgcacgtggtggcg
ctgcgcaaacacatggtggcacttcctctgcagtaccgtgaacaggaggaggtgcaggtt
cgtatgggagaggtggagcagctgtatacagaggtggccgaggtggcggtgctcagacag
cagtggcttcatgatgccctcgctgtgtaccgcatgttcagtgaggtcaacgcctgtgag
ctgtggattgatgagaaggagcagtggctggataagatggagatcccagagaggctagag
gacgtggaggtggtggcacacaggtttgagagtctggaccaggaaatgaacagcctgatg
ggaaggatcctggatgttaatcagatagttcagcagctcctggatggaggtcatccatct
tctacagaggtcagaggttgtcaggaccacctcaactccaggtggaacaccattgtggag
ctagttgagcagaagaaagatcagctagactcgatgttacgcctgcagaactatctgctg
gagtgtgccgagatcaagtcccagatccaggacaagagaaaagccatcgacgccacccag
tacgtgggcagcgatctgggaggagtcctggctctgcagagacgcctttccaccatggag
ggagccctgtctgtcctggagcccaaactactacatctgcaggaggaggcagagcatctg
gccaccgctcacccgggtcgagccatggaggttcttgtgccatttgacggcatcagtgtg
gagtgggaggagctgaaacacaccctgcagggctgtgaggactcactgatggtggctagc
aggctgcaaagcttcatccaggacctggactcgttcctcacctggctggtccagacgcag
acatccgctgcctcagaccagctgcccaatgacctggaggaggctgagagactcatcaac
aaacatgctgccctcaaggaggagataggacggtatgaggaggactacgagcgcctgcag
gccatgaacgagctgctggagtctgaagaggctcctctcccccaggccgccctgcagcag
tggctccagaagctcgatgttggctggaataaactgctggagatgtgggagagcagaaga
gaggttctggtccaggctcacattttccacctgttcctgcgagatgttaaacaggctgag
tccttcctcaataaccaggaatcggccctcgctcacgtggagctgcccaccacggtggaa
acagttgaagctgccataaagaaacacaaggacttcaccaccaccatggagctgaaccta
cacaggatcaaagctgtgatcgaggctggagagagtctgatcagccagagcaacatctac
tctgaacgcatcagggaacgcatcgacaccctcgccaacaggggaaaccagaacagagag
ctggcccagcagtggttggaaaaactgaacgatcagtgggaacttcagaggtttctccag
gactgtcatgagctgggggactgggtgtgtgagaagatgctgatggcgagggacagcagc
cgagacgagacccagaagcttcataagaaatggctgaaacaccaggccttcatggccgag
ttggcccagaataaggaatggctggacaaaattgaaaaggagggccagcacctgatccag
gagaagccagagctcagccctgtggtccggaagaagctggaggagatcagggagtgctgg
caggacctcgagagcaccacccaggccaaagcccgccagctcttcgaggccaacaaggca
gacctgctggtgcagagctacgaaagcctagaccagagactgggccagctggagggtcaa
ctggcctacgtggaccagggacaggacctcaccaccgtcaacaagcagctaaaaaaacta
cagaccatggagacccagatggaggagtggtataaggaggtggggcagctccaggtgcag
gcagcttccatcccacagcagacgcagatcaaggagacggtcgcagggcgccaggcggcc
gtggaggccaggatggtgcgtctgatcgagccgctgaaggagagacgacgcatcctgctg
gcatctaaggaagtccaccaagtcggacgagacctggaggacgagattttgtgggtccag
gagcgcctcccgatggccatgtctcaggagcacggctccaccttgcaggcggtccagcaa
ctcatgaagaagaatcagacacttcagagggagctgcagggccatagaagcaggatcgag
gacgtcctggagagggcagggatcatcgcctccatacgcagccccgaggccgactgcgtc
agggctggtcatgaccagctggcccagctgtggtctctgctctgggcagagaccgagagg
aggcaactggtcctggacgccatgtaccaggctcagcagtactactttgacactgctgaa
gtggaggcctggctgagtgagcaggagctacacatgatgaatgaggagaagggaaaggac
gagccgagcacactgcagctgctgaagaaacacttggtcctggaacagaccatcgaggac
tatgctgagaccatcggcctgctgtcacagcagtgtcgacagctgctggagatggggcac
ccagactgcgagcacatcagcaagcgccagtcgcagatcgaccgtctgtacgtgtctctg
aaggacctggtggaggagaggaagagccgcctagagcagcagtactggctctaccagctc
aacagagaggtggacgagctggagcagtggatcgctcagaaggaggtggttgccagctcg
cccgaactgggtcaagactttgagcatgtcacagtcctgcaggagaagttcacagagttt
gcatcagagacaggcagtgtggggcaagaacgcgtgacggccgtcaaccagatggtggac
gagctcatcgactacggccactcagaggccgccaccatcgctgaatggaaggacggggtg
aacgaggcctgggccgacctgttggagctcatggagacccgggcgcagatgcttgccgcc
tcacaccagctgcacaagttcttctctgactgtagagagattttgactcagattgaggac
aaacatcgaagactgccagaagttcgggctcggcagggcagcactgccaacaccagcacc
ctgcagagactcctgcacagctttgagcaggacatacagctgctggtcacgcaggtgcgt
cagctacaggagagcgcggcccagctgaggacggtgtacgccggcgagaaagctgaagcc
atcgcatgttgtgagcatgaagtgatgcagggctggaaagagctgctgacatcctgtgaa
gagtgtcgagtgcaaatcaccacagagacagacaagctgaggttcttcggcatggtccga
gatcagatcatgtggatggattcgatcatctgtcagatagggacaggagagaagcccagg
gacgtgtcctcggtagaggtgcttatgaattatcaccagagtcttaagagcgaagtggaa
gctcgcagccggagcataatggagtgtattgaaatgggaaagaccctcctggctgctaga
aatcctgcagctgaagagatcaaggagaagctggacaaggtggttgctaagcaacgtgag
ctgtctgagaagtgggacaagcactgggaagtcctacagcaattgttggaggttcaccag
tttgcccaggacgcggtggtggcagaggcgtggctgacagctcaggagccgttcattaac
agcagcgagctgggcgggagtgtagacgaggtggagcagcttattcgtcgacatgaagcc
ttccgcaaagccgccgctacctgggaagaacggttcagctcactgcgacgactcactacg
gtagaaaagttgaaagcagagcaaagtaaactacccccaactcctctgctgggtcgtaaa
gtcttcctggacccccaagatgccgcacccagtccagccaccctcccccgcctgccaatc
tcccccgttatgagacaaaccatctatgaacagaacgaagccagctctcctccttcaccc
tcgcctgccacccctacaccctctccttcttctgtggttcgtcgcctggggtcgacagtc
gccaactacacccctgtgatgaatggctccagctaccgccacaccctggaggcacggcac
ggcggggtggtgggtgtggccgcaggattaggccagcctgcactgtcctcgattgcgtct
attgccacggcggccatgctagtctcagccaaccaggtacgagagggcgccagcacggcg
agagaccaggcgacgaaggtgatgagtcacctccagccagtgcaggcagcgagggaacta
gaggcgaaatcatccccgtatctaaggcaacccaaaatcaaacacatggatgacgcagtg
acgcccctgctcgtagccagccggctggagaaggtgagggagagggggagggagagagag
atcatgatgggagagatagggacagagagagcagaggtagcggtgatggccgaggtggtg
ctccaggagccgagtcgggagcgtctacacagtgaacccaccagagggcctcgggggtcc
aggaccgacccattgggccacgccgagccccaggtccagacacacacctaccacagggac
cacaggatagaacggcagctgtccagcgagcagctgatccaagctcgcagggacgagctg
cctcaggaggtgtggagggaacaggctgagagacgagagagacggacactggaaagacaa
acgtccagcgagcaggagggtcacgggggccacgagggccggcggagagagagggaccga
caccggctggagagacaagaatccagtgagcatgacaccgggaaggagcactcagacagg
cgctcaggaggaggagagaagagatccaccctggcagaaattgtagagcagctgcaagaa
agagaagcagcacaggcccgtggtgaggtgccccgcctccctaacgggttaccagagaag
tcttcccgtcccgaccggcctcgagctcgggacagacccaaaccacggcgccgaccgcga
cccaaagagccaggcgagacgacacgacggtccaggtctgctcctgctcagagcagcccg
gcagtcccccagccgccaacacacaccgcacaccatgagggcttccttttccgcaagctg
gacatcgagagtctgaagaaaagcaccaacaggtcatgggtcaacctgtactgcgtgctg
aataaaggagagatgggtttctacaaggacgccaagaacaccaccacgccctacaacaac
gagccgctgctcagcctctcccactgccactgcgacgtcactaacggctacaagaagaag
aagaacgtcttcacgctcaaaacgaaggacggcagcgagtttttgtttcatgctaaagat
gaggaggacctcaaagcatgggtgaccaacatcaccaccagtatttcagagcacgaggag
attgccaaatggggtcagccccaaccaactacctcatccaccgacgagggtacacggcgc
gacggcagcaaggcggacaacaggtcagagcgaggcggtgagcgctcggaccgggccgac
cggatcgagagggcagacaaagaaagggagaaagagagggagagagagaaggagagggag
agaggcgaacggtcggagaggtcagataagggtgggaagtcggacgcgaagcgctcagag
aaatctggtaagaaaaagtga
DBGET
integrated database retrieval system
