Lates calcarifer (barramundi perch): 108876139
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Entry
108876139 CDS
T04895
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108876139
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108876139
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108876139
Intermediate filaments
Intermediate filament-binding proteins
108876139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
CREPT
SLATT_6
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
108876139
NCBI-ProteinID:
XP_018520991
UniProt:
A0A4W6D0X6
LinkDB
All DBs
Position
LG21:21374027..21453210
Genome browser
AA seq
2706 aa
AA seq
DB search
MANASPDLDNADAQRQLNNNNRPISSGFWETECTSSKLFECSRIKALADERDAVQKKTFT
KWVNSHLARVSCRISDLYNDLRDGYMLTRLLEVLSGELLPRPTRGRMRIHCLENVDKALQ
FLKEQRVHLENVGSHDIVDGNHRLTLGLIWTIILRFQIQVIKIETEDNRETRSAKDALLL
WCQMKTAGYPEVNIQNFTTCWRDGLAFNALIHRHRPDLIEFHKLTRSNATHNLQQAFNIA
EQHLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALIVEGKRVGKVLDNCIEAE
KIINRYEALASDLLDWIEKTIAVISNQKFANSLTGVQQQLQAFTTYCTIEKPIKFQEKGN
LEVLLFTIQSKLRANNQKPYVPHDGKLISDINKAWERLEKAEHERGVALRKELIRQEKLE
LLAQRFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADIASYEERIGVV
VELAAEMEAEGYYDIRRILARKENILGQWGLLKELVAGRRTRLEKNLALQKTFQDMVYMI
DWMEDTQVQLLSKDFGKHLLEVDDLLQKHSLQEADIAVQAERVETLNTAALKFTTIEGYQ
PCDPQVICNRVNHVSSCLEELKQLAAKRRAELEESRQLWAFFQELEESEAWIREKSSILG
AQGYGKDLSSVLRLLQKHKTLAGELLAHRSLLQNTMKRGKQILSEKSFGTAGIQERIMEV
KGEWKRLEDQAAQRLGHLQEALNFFQFSTETDDLVAWLQDAYRLVSSEDFGHDEYSTQSL
LKKHRGVSEAVDKHRLHVVALRKHMVALPLQYREQEEVQVRMGEVEQLYTEVAEVAVLRQ
QWLHDALAVYRMFSEVNACELWIDEKEQWLDKMEIPERLEDVEVVAHRFESLDQEMNSLM
GRILDVNQIVQQLLDGGHPSSTEVRGCQDHLNSRWNTIVELVEQKKDQLDSMLRLQNYLL
ECAEIKSQIQDKRKAIDATQYVGSDLGGVLALQRRLSTMEGALSVLEPKLLHLQEEAEHL
ATAHPGRAMEVLVPFDGISVEWEELKHTLQGCEDSLMVASRLQSFIQDLDSFLTWLVQTQ
TSAASDQLPNDLEEAERLINKHAALKEEIGRYEEDYERLQAMNELLESEEAPLPQAALQQ
WLQKLDVGWNKLLEMWESRREVLVQAHIFHLFLRDVKQAESFLNNQESALAHVELPTTVE
TVEAAIKKHKDFTTTMELNLHRIKAVIEAGESLISQSNIYSERIRERIDTLANRGNQNRE
LAQQWLEKLNDQWELQRFLQDCHELGDWVCEKMLMARDSSRDETQKLHKKWLKHQAFMAE
LAQNKEWLDKIEKEGQHLIQEKPELSPVVRKKLEEIRECWQDLESTTQAKARQLFEANKA
DLLVQSYESLDQRLGQLEGQLAYVDQGQDLTTVNKQLKKLQTMETQMEEWYKEVGQLQVQ
AASIPQQTQIKETVAGRQAAVEARMVRLIEPLKERRRILLASKEVHQVGRDLEDEILWVQ
ERLPMAMSQEHGSTLQAVQQLMKKNQTLQRELQGHRSRIEDVLERAGIIASIRSPEADCV
RAGHDQLAQLWSLLWAETERRQLVLDAMYQAQQYYFDTAEVEAWLSEQELHMMNEEKGKD
EPSTLQLLKKHLVLEQTIEDYAETIGLLSQQCRQLLEMGHPDCEHISKRQSQIDRLYVSL
KDLVEERKSRLEQQYWLYQLNREVDELEQWIAQKEVVASSPELGQDFEHVTVLQEKFTEF
ASETGSVGQERVTAVNQMVDELIDYGHSEAATIAEWKDGVNEAWADLLELMETRAQMLAA
SHQLHKFFSDCREILTQIEDKHRRLPEVRARQGSTANTSTLQRLLHSFEQDIQLLVTQVR
QLQESAAQLRTVYAGEKAEAIACCEHEVMQGWKELLTSCEECRVQITTETDKLRFFGMVR
DQIMWMDSIICQIGTGEKPRDVSSVEVLMNYHQSLKSEVEARSRSIMECIEMGKTLLAAR
NPAAEEIKEKLDKVVAKQRELSEKWDKHWEVLQQLLEVHQFAQDAVVAEAWLTAQEPFIN
SSELGGSVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTTVEKLKAEQSKLPPTPLLGRK
VFLDPQDAAPSPATLPRLPISPVMRQTIYEQNEASSPPSPSPATPTPSPSSVVRRLGSTV
ANYTPVMNGSSYRHTLEARHGGVVGVAAGLGQPALSSIASIATAAMLVSANQVREGASTA
RDQATKVMSHLQPVQAARELEAKSSPYLRQPKIKHMDDAVTPLLVASRLEKVRERGRERE
IMMGEIGTERAEVAVMAEVVLQEPSRERLHSEPTRGPRGSRTDPLGHAEPQVQTHTYHRD
HRIERQLSSEQLIQARRDELPQEVWREQAERRERRTLERQTSSEQEGHGGHEGRRRERDR
HRLERQESSEHDTGKEHSDRRSGGGEKRSTLAEIVEQLQEREAAQARGEVPRLPNGLPEK
SSRPDRPRARDRPKPRRRPRPKEPGETTRRSRSAPAQSSPAVPQPPTHTAHHEGFLFRKL
DIESLKKSTNRSWVNLYCVLNKGEMGFYKDAKNTTTPYNNEPLLSLSHCHCDVTNGYKKK
KNVFTLKTKDGSEFLFHAKDEEDLKAWVTNITTSISEHEEIAKWGQPQPTTSSTDEGTRR
DGSKADNRSERGGERSDRADRIERADKEREKEREREKERERGERSERSDKGGKSDAKRSE
KSGKKK
NT seq
8121 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgcctccccagatctggacaacgcggatgcccagcgccagctcaacaacaac
aaccgaccaatcagctctgggttctgggagacagagtgtaccagctccaagctgttcgag
tgctcccgcatcaaggccctggcagatgaacgagatgcggtgcagaagaagacttttacc
aagtgggtcaactcgcatctggccagagtgtcctgtcgcatatctgacctgtacaacgac
ctgagagatggatacatgcttaccagactgctggaggtcctcagcggagagctgctgccg
aggcctactcggggtcgtatgcggatccactgcctggaaaacgttgacaaagccctgcag
ttcctcaaagaacagagggttcacctggaaaatgttggttcccatgacattgtggatgga
aaccaccgcctcactctgggccttatctggaccattattctacgcttccagatccaggtg
atcaaaatagagacagaggacaacagagaaactcgctctgccaaggatgccctgctgctc
tggtgccagatgaagaccgcagggtaccctgaggtcaatatccagaacttcaccacttgc
tggagagacggccttgcctttaatgccctcatacacagacacagacctgacctgatagag
ttccacaagctgacacgatccaatgcaacccataacctccagcaagccttcaacatcgct
gagcagcacctgggcctcaccaaactcctggaccctgaggatgtgaacacagagaaccca
gacgaaaagtccatcatcacctatgtggtctcctactatcactacttctccaagatgaaa
gctcttattgtggaaggcaagagggttggcaaggtactagacaactgtattgaggcagag
aaaatcatcaaccgctatgaggctttggcatcagatctgctggactggattgagaagacc
attgcggtcatcagcaaccagaagtttgctaactcactgaccggagttcagcagcagctt
caggccttcacaacctactgcaccatagagaagccaatcaagtttcaggagaaggggaat
ctcgaggtccttctcttcaccatccaaagcaaactcagagccaacaaccagaaaccctat
gtgcctcacgatgggaagctcatctcagacatcaacaaggcctgggagagactggagaag
gcggagcacgagaggggcgtggctctgcgcaaggagctgattcgtcaggaaaagctggag
ttgttggctcagcgctttgaccataaaaccaccatgagacaagcctggctcaacgaaaat
cagcgacttgtatcacaggacaattttggctacgacctaccagcagtcgaagcagcaatg
aagaaacacgaggccatcgaggcggacatagcctcgtatgaagaacgaattggagtggtg
gtggaacttgcagcagagatggaggcggaaggatactacgacatccggcggatcttggca
cgcaaggagaacatcctggggcagtggggtctactgaaggaactggtggcagggaggaga
acccgtctggagaagaacctggcactgcagaagacttttcaggacatggtctacatgatc
gactggatggaggacacacaggtccagctgttgtcaaaggactttgggaagcatcttctg
gaggtggacgacctgcttcagaaacacagcctgcaggaagctgacattgctgtacaggct
gagagggtcgagaccctgaacacagctgctctgaaattcaccacgatagagggttaccag
ccgtgtgacccgcaggtgatctgtaaccgtgtcaaccatgtctcttcttgtctggaggag
ctgaaacaactggcagctaaaagacgagctgagctcgaggagtcgagacagctgtgggcc
ttttttcaggagctggaggagtcggaggcctggatcagggagaagagctccatcctggga
gctcagggttatgggaaggacctgagcagtgtactgaggttacttcagaaacacaagact
ctggctggagaactgctggctcaccggtcgctgctgcagaacaccatgaagcgaggaaag
cagatcctgagtgagaagagctttggcacagctgggatccaggagcgcatcatggaggtg
aagggcgagtggaagcgactggaggaccaggcggcgcaacgtctcggccacctgcaggag
gctctcaactttttccagttctccacggagacagacgacttggtggcctggctgcaggat
gcttaccgcctggtctccagcgaagacttcggacacgacgagtactctactcagtcactg
ctcaagaaacacagaggggtcagcgaggccgtcgacaaacatcgtctgcacgtggtggcg
ctgcgcaaacacatggtggcacttcctctgcagtaccgtgaacaggaggaggtgcaggtt
cgtatgggagaggtggagcagctgtatacagaggtggccgaggtggcggtgctcagacag
cagtggcttcatgatgccctcgctgtgtaccgcatgttcagtgaggtcaacgcctgtgag
ctgtggattgatgagaaggagcagtggctggataagatggagatcccagagaggctagag
gacgtggaggtggtggcacacaggtttgagagtctggaccaggaaatgaacagcctgatg
ggaaggatcctggatgttaatcagatagttcagcagctcctggatggaggtcatccatct
tctacagaggtcagaggttgtcaggaccacctcaactccaggtggaacaccattgtggag
ctagttgagcagaagaaagatcagctagactcgatgttacgcctgcagaactatctgctg
gagtgtgccgagatcaagtcccagatccaggacaagagaaaagccatcgacgccacccag
tacgtgggcagcgatctgggaggagtcctggctctgcagagacgcctttccaccatggag
ggagccctgtctgtcctggagcccaaactactacatctgcaggaggaggcagagcatctg
gccaccgctcacccgggtcgagccatggaggttcttgtgccatttgacggcatcagtgtg
gagtgggaggagctgaaacacaccctgcagggctgtgaggactcactgatggtggctagc
aggctgcaaagcttcatccaggacctggactcgttcctcacctggctggtccagacgcag
acatccgctgcctcagaccagctgcccaatgacctggaggaggctgagagactcatcaac
aaacatgctgccctcaaggaggagataggacggtatgaggaggactacgagcgcctgcag
gccatgaacgagctgctggagtctgaagaggctcctctcccccaggccgccctgcagcag
tggctccagaagctcgatgttggctggaataaactgctggagatgtgggagagcagaaga
gaggttctggtccaggctcacattttccacctgttcctgcgagatgttaaacaggctgag
tccttcctcaataaccaggaatcggccctcgctcacgtggagctgcccaccacggtggaa
acagttgaagctgccataaagaaacacaaggacttcaccaccaccatggagctgaaccta
cacaggatcaaagctgtgatcgaggctggagagagtctgatcagccagagcaacatctac
tctgaacgcatcagggaacgcatcgacaccctcgccaacaggggaaaccagaacagagag
ctggcccagcagtggttggaaaaactgaacgatcagtgggaacttcagaggtttctccag
gactgtcatgagctgggggactgggtgtgtgagaagatgctgatggcgagggacagcagc
cgagacgagacccagaagcttcataagaaatggctgaaacaccaggccttcatggccgag
ttggcccagaataaggaatggctggacaaaattgaaaaggagggccagcacctgatccag
gagaagccagagctcagccctgtggtccggaagaagctggaggagatcagggagtgctgg
caggacctcgagagcaccacccaggccaaagcccgccagctcttcgaggccaacaaggca
gacctgctggtgcagagctacgaaagcctagaccagagactgggccagctggagggtcaa
ctggcctacgtggaccagggacaggacctcaccaccgtcaacaagcagctaaaaaaacta
cagaccatggagacccagatggaggagtggtataaggaggtggggcagctccaggtgcag
gcagcttccatcccacagcagacgcagatcaaggagacggtcgcagggcgccaggcggcc
gtggaggccaggatggtgcgtctgatcgagccgctgaaggagagacgacgcatcctgctg
gcatctaaggaagtccaccaagtcggacgagacctggaggacgagattttgtgggtccag
gagcgcctcccgatggccatgtctcaggagcacggctccaccttgcaggcggtccagcaa
ctcatgaagaagaatcagacacttcagagggagctgcagggccatagaagcaggatcgag
gacgtcctggagagggcagggatcatcgcctccatacgcagccccgaggccgactgcgtc
agggctggtcatgaccagctggcccagctgtggtctctgctctgggcagagaccgagagg
aggcaactggtcctggacgccatgtaccaggctcagcagtactactttgacactgctgaa
gtggaggcctggctgagtgagcaggagctacacatgatgaatgaggagaagggaaaggac
gagccgagcacactgcagctgctgaagaaacacttggtcctggaacagaccatcgaggac
tatgctgagaccatcggcctgctgtcacagcagtgtcgacagctgctggagatggggcac
ccagactgcgagcacatcagcaagcgccagtcgcagatcgaccgtctgtacgtgtctctg
aaggacctggtggaggagaggaagagccgcctagagcagcagtactggctctaccagctc
aacagagaggtggacgagctggagcagtggatcgctcagaaggaggtggttgccagctcg
cccgaactgggtcaagactttgagcatgtcacagtcctgcaggagaagttcacagagttt
gcatcagagacaggcagtgtggggcaagaacgcgtgacggccgtcaaccagatggtggac
gagctcatcgactacggccactcagaggccgccaccatcgctgaatggaaggacggggtg
aacgaggcctgggccgacctgttggagctcatggagacccgggcgcagatgcttgccgcc
tcacaccagctgcacaagttcttctctgactgtagagagattttgactcagattgaggac
aaacatcgaagactgccagaagttcgggctcggcagggcagcactgccaacaccagcacc
ctgcagagactcctgcacagctttgagcaggacatacagctgctggtcacgcaggtgcgt
cagctacaggagagcgcggcccagctgaggacggtgtacgccggcgagaaagctgaagcc
atcgcatgttgtgagcatgaagtgatgcagggctggaaagagctgctgacatcctgtgaa
gagtgtcgagtgcaaatcaccacagagacagacaagctgaggttcttcggcatggtccga
gatcagatcatgtggatggattcgatcatctgtcagatagggacaggagagaagcccagg
gacgtgtcctcggtagaggtgcttatgaattatcaccagagtcttaagagcgaagtggaa
gctcgcagccggagcataatggagtgtattgaaatgggaaagaccctcctggctgctaga
aatcctgcagctgaagagatcaaggagaagctggacaaggtggttgctaagcaacgtgag
ctgtctgagaagtgggacaagcactgggaagtcctacagcaattgttggaggttcaccag
tttgcccaggacgcggtggtggcagaggcgtggctgacagctcaggagccgttcattaac
agcagcgagctgggcgggagtgtagacgaggtggagcagcttattcgtcgacatgaagcc
ttccgcaaagccgccgctacctgggaagaacggttcagctcactgcgacgactcactacg
gtagaaaagttgaaagcagagcaaagtaaactacccccaactcctctgctgggtcgtaaa
gtcttcctggacccccaagatgccgcacccagtccagccaccctcccccgcctgccaatc
tcccccgttatgagacaaaccatctatgaacagaacgaagccagctctcctccttcaccc
tcgcctgccacccctacaccctctccttcttctgtggttcgtcgcctggggtcgacagtc
gccaactacacccctgtgatgaatggctccagctaccgccacaccctggaggcacggcac
ggcggggtggtgggtgtggccgcaggattaggccagcctgcactgtcctcgattgcgtct
attgccacggcggccatgctagtctcagccaaccaggtacgagagggcgccagcacggcg
agagaccaggcgacgaaggtgatgagtcacctccagccagtgcaggcagcgagggaacta
gaggcgaaatcatccccgtatctaaggcaacccaaaatcaaacacatggatgacgcagtg
acgcccctgctcgtagccagccggctggagaaggtgagggagagggggagggagagagag
atcatgatgggagagatagggacagagagagcagaggtagcggtgatggccgaggtggtg
ctccaggagccgagtcgggagcgtctacacagtgaacccaccagagggcctcgggggtcc
aggaccgacccattgggccacgccgagccccaggtccagacacacacctaccacagggac
cacaggatagaacggcagctgtccagcgagcagctgatccaagctcgcagggacgagctg
cctcaggaggtgtggagggaacaggctgagagacgagagagacggacactggaaagacaa
acgtccagcgagcaggagggtcacgggggccacgagggccggcggagagagagggaccga
caccggctggagagacaagaatccagtgagcatgacaccgggaaggagcactcagacagg
cgctcaggaggaggagagaagagatccaccctggcagaaattgtagagcagctgcaagaa
agagaagcagcacaggcccgtggtgaggtgccccgcctccctaacgggttaccagagaag
tcttcccgtcccgaccggcctcgagctcgggacagacccaaaccacggcgccgaccgcga
cccaaagagccaggcgagacgacacgacggtccaggtctgctcctgctcagagcagcccg
gcagtcccccagccgccaacacacaccgcacaccatgagggcttccttttccgcaagctg
gacatcgagagtctgaagaaaagcaccaacaggtcatgggtcaacctgtactgcgtgctg
aataaaggagagatgggtttctacaaggacgccaagaacaccaccacgccctacaacaac
gagccgctgctcagcctctcccactgccactgcgacgtcactaacggctacaagaagaag
aagaacgtcttcacgctcaaaacgaaggacggcagcgagtttttgtttcatgctaaagat
gaggaggacctcaaagcatgggtgaccaacatcaccaccagtatttcagagcacgaggag
attgccaaatggggtcagccccaaccaactacctcatccaccgacgagggtacacggcgc
gacggcagcaaggcggacaacaggtcagagcgaggcggtgagcgctcggaccgggccgac
cggatcgagagggcagacaaagaaagggagaaagagagggagagagagaaggagagggag
agaggcgaacggtcggagaggtcagataagggtgggaagtcggacgcgaagcgctcagag
aaatctggtaagaaaaagtga
DBGET
integrated database retrieval system
