Lates calcarifer (barramundi perch): 108876214
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Entry
108876214 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: cell adhesion molecule-related/down-regulated by oncogenes
KO
K20033
cell adhesion molecule-related/down-regulated by oncogenes
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108876214
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
fn3
ig
Ig_2
Ig_DSCAM-DSCAML_C
V-set
Pur_ac_phosph_N
C2-set_2
Fn3_VIN3
Y_Y_Y
Ig_VEGFR-1-like_5th
DUF7359
Motif
Other DBs
NCBI-GeneID:
108876214
NCBI-ProteinID:
XP_018521090
UniProt:
A0AAJ7LG60
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Position
LG21:complement(20280454..20312540)
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AA seq
1119 aa
AA seq
DB search
MDSGLRVLLSTVLCLSQSLLISCSSQYPSFSSEPASLVQSRGSVARLHCLVSPPSAVVSW
RFRALPLHQDTLPGVELSGGSLTISSLKPSHVGVYQCVAHLDHGPAIASRLARVDIAEIS
QYEDGRRRPLSVQDGSTVLIECPLPHSIPPARPRLRVRGEWMEESTDDYLVLPSGNLQII
SVSVQHQGMYKCGAFNPVTGETVMQPHGTRLSVKHLDASSSVRIVYPTAPMTVKVQQSQP
LTLECIMSGGPAPVAKWFKNGNEVTPGPLHQRQHNNLVFVMVARGDEGSYTCAAETEQGA
VISANYTVNVLEPVSVMEGLSDQFVSPGSSAHFTCVARGNPSPNITWLFNADPISPSHRV
HISGSSLVVTDVRPQDVGVYQCLLDNGIGSAQSYGMLLMQPDPQLDTAAVVLPEASPSLH
PMQRDEGHDEDAGDTVNLPADRSGDRPTPEAPIITSPPQTHKPDIYDLEWRAGRDGGSPI
IAYFVKYRKVDEMGVVVGSWHTVRVPGSEKTLRLSELESSSLYEVLMVARSSAGEGQPAM
LTFRTGKEKSTSSNKNPSKPPVVSMPPKAPEEKTPNTHFGVIIHDRVPEAPDRPTISMAT
ESSVYVTWIPRANGGFPVTAFRVEYRRGRSAEWVVAADNISPLKLSVEVRNLEPGSTYKF
RVVAMNMYGESPPSTPSKQYHVPQASPRMADRPVVGPHISSTDAISDTQIMLRWTYSPSS
NNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGVKHWHMIGHLQPETSYDIKMQCFNDGGES
DYSNVMICETKARQSPGSPSQHPITPPGPHPQEPPSPPGGLLYLIVGCVLGVMVLILLAF
IAMCLWRNRQQNNMHKYDPPSYLYQPAEMNGHVLEYTTLPGTSRINGGVHGGYGHSGPML
PQGCHHLHHKLPNGLALLNGSGGLFSPGHPHGHDGTLPHSTRDCEHSHAHHHHNGGGMYT
ALPQTESSDCMSCQNLCNNNRCYNKTNGTFSSGTLPLMHRVAPCQQDGLEMVPLGQVSSQ
CHGRDSQMNSGDQEADAGYQPDEHKESSPSQHSCCLVGNNENCPADNTAEEELECMDTER
PVVCWESLGLPDLDCDEKPGWISSSSLAGELIQPGPQEV
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atggacagtggcctaagggtcctcctgtccactgtgctgtgtctcagccagtcattgctt
atcagctgctcatctcaatatccctcttttagctctgaacctgcctccttggttcagagt
cgaggctctgtcgctcgtctgcactgcttagtaagtcctccatcagctgtggtttcctgg
cgcttcagagcccttcccctgcaccaggatactctgcctggtgtggagctcagcgggggc
tccctcaccatctcctccctgaagcccagccatgtcggcgtctatcagtgtgtggcacac
ttagaccacgggccggccatcgccagtcgcctcgcgcgtgtggacatagcagaaatttca
caatatgaagatggccggcggcggccgttatcagtgcaggacggtagcactgttcttata
gagtgtcctctaccgcacagcatccccccagcccgtcctagactaagagtacgaggggag
tggatggaagagtctacagatgactatttagttcttccatctggaaaccttcagattatc
tctgtttcagtccagcaccagggcatgtataaatgtggtgcattcaaccctgtcactggg
gaaaccgtcatgcagcctcatggtaccaggctatcagtgaaacatttagatgcctcctcc
tcagtgcggatagtttatcccactgccccaatgaccgttaaggtgcagcagtcacagcca
ctgacgctggagtgtatcatgtctggtggtcctgcacctgtagccaaatggtttaagaat
ggtaatgaggtcacaccagggcctttgcaccaaagacagcacaacaacctggtctttgtt
atggtggcaagaggcgatgaggggagttacacctgcgccgctgagaccgagcagggggct
gtgatcagcgctaactacactgtgaatgttcttgagcctgtgtctgtcatggagggcctc
agcgaccagttcgtctctcctggttcctctgctcattttacctgcgtagccagaggaaac
ccctccccaaacatcacctggctgttcaatgctgatcccatatccccatcacaccgtgtt
cacatctctggatcctcactggttgttacagatgtgagaccacaggatgtgggcgtgtat
cagtgtctgctggacaacgggattggctcggcacagtcatatggaatgcttttgatgcaa
ccagatccgcagcttgacactgctgccgttgtcctgccggaggcctcgccgtctctccat
cccatgcaacgcgatgagggccatgatgaagatgcgggtgacacagtcaacctgccagct
gataggagcggtgaccgtcctactccagaggcaccgatcatcaccagcccgccgcagact
cacaagcctgatatatacgatctggagtggagggcagggcgtgatggaggcagtccaatc
attgcttattttgtcaaataccgtaaggtcgatgaaatgggagtggtggtggggagctgg
catacagttcgtgtccctggcagtgagaagaccctgcggctgtcagagctggagtcctcc
agtctctatgaggtgctgatggtggctcgaagttcagcaggcgagggccagccggccatg
ctcaccttccgcaccggcaaggagaagagcacctcctccaacaagaacccgtccaagcct
cccgtcgtctccatgccccccaaagctccagaggaaaaaacccccaacacacactttgga
gtcatcattcatgacagagtacccgaggcccccgaccgccccaccatctccatggcaact
gaaagttcagtgtatgtcacctggatccccagagcgaacggtggctttccggtcacggct
ttccgtgttgagtacagacgcggccgcagcgcggagtgggttgtggctgccgataatatc
tcacctcttaaactgtctgtggaagttcgcaacctggagcctggctccacctacaagttt
cgtgttgtagccatgaacatgtatggagagagcccccccagcactccgtcaaagcagtat
catgtgccacaagccagcccacgtatggctgaccgccccgtggttggaccccacatctca
tctacagacgccatcagtgacacgcagatcatgctgcgctggacttatagtccctcgagt
aacaacaacactccaatccaaggtttctacatttactaccggcccacagacagcgacaat
gacagtgactacaaaagggatgtggtcgaaggtgttaaacactggcacatgattggacat
cttcagcctgagacctcttacgatatcaagatgcagtgctttaatgatgggggagagagc
gattacagcaacgtcatgatctgtgagacgaaagcacgtcagtccccggggtcgcctagc
cagcaccccatcaccccacctggcccccacccgcaggagcccccgagccctcctggggga
ctgctgtacctgatcgtgggctgtgttttgggggtaatggtgctcattctgctggctttt
atcgccatgtgcctgtggaggaatcgccagcagaacaacatgcacaagtatgaccctccc
agctacctgtaccagccagcagagatgaacggccatgttctcgagtacaccacacttcct
ggcaccagccgcatcaacgggggcgtccacgggggctacgggcacagtggccctatgtta
ccccaagggtgccatcacctccaccacaaactccccaacggcttggcgctgctcaacggt
tccggtggcctgttctcgcctggccacccgcacggccatgatggtaccctgccccacagc
acccgagactgcgaacactcgcacgcgcaccaccaccataacggcggaggcatgtacacc
gctcttccccaaacagagtcctctgattgtatgagctgtcagaacctctgcaacaacaac
agatgttacaacaagaccaatggcactttctccagcggcactctgcccctaatgcatcgc
gtggcgccgtgccagcaggacgggctggagatggtgcctctgggccaggtttcatcgcag
tgccacggccgcgacagccagatgaactctggcgaccaggaggctgacgcagggtaccag
ccagacgagcacaaggagtcctcgccctcacagcattcctgctgtctggtcgggaacaat
gaaaactgtccagcagacaacactgctgaggaggagctggagtgcatggacacagagagg
cctgtggtgtgctgggagagtcttggcctgccagacttggactgtgacgaaaagcctggg
tggatctctagcagcagcctggcgggagagctgatccagcccggcccacaggaggtctga
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