Lates calcarifer (barramundi perch): 108876228
Help
Entry
108876228 CDS
T04895
Name
(RefSeq) contactin-5
KO
K06761
contactin 3/4/5/6
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108876228
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
108876228
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Contactins
108876228
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lcf00537
]
Others
108876228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_C17orf99
Ig_5
C2-set_2
Ig_DSCAM-DSCAML_C
Ig_4
Pur_ac_phosph_N
C2-set
Interfer-bind
fn3_4
PKD_3
Motif
Other DBs
NCBI-GeneID:
108876228
NCBI-ProteinID:
XP_018521113
UniProt:
A0A4W6CAV0
LinkDB
All DBs
Position
LG21:complement(19697704..19791136)
Genome browser
AA seq
1098 aa
AA seq
DB search
MGSPWKPFLLLSIISGLSDFARAVAARPISYAAVLRMKPDSSSSLLNSRSRPRQHHSGGL
VTPDWPAFSSHPLSALSLLSSQEDYRSEESEEFGPVFAQEPDDVIFPLDSDEKKVVMHCE
ARGNPPPTYSWYINGTEVDAEADYRYSFIDGNLIITNASEITDHGKYQCKAENSFGTILS
RDALLQFAYLGAFSGKTRGGVSVREGQGVVLMCTPPPHSPEIIYSWVFNEFPSFVAEDSR
RFISQDTGNLYISKVQPSDVGSYICLVKNTVTNARVLSPPTPLTLKTDGVMGEYEPKIEV
HFPTSVLAAKGVTVRLECFALGNPVPTITWRKINGNIPKKARLRKSQAVLEIPNIQLEDS
GTYECKAENPRGGTAFKGHLQVYTFPQWVRMINDTQMDSGEKLQWECKATGRPRPTYRWL
RNGVPLTSQGRLEIVNGDLTIHKVQQTDSGMYQCVAENKYGAIYSSAELKILASAPVFVP
NPVRVIATLGKDVSLECKPRASPKPRITWKRGDRRIQPNKRIMLLRNNTLRIVNSSRADE
GNYVCRAENQLGSAEMTAILWVKEAMRVELSPIRVEVTVGESVVLSCKATHDTSLDVAFQ
WFFNQKPINFQQDGGHFEYIQTVRARQSSTVDLMIRSILLKHAGKYGCRAQTSADTVFAE
SELLVRGPPGPPGVVIVEEITDTTATLSWTRGLDNHSPISTYNLQARSPFSLGWQTVKTD
PDPVTGDMESAIAVELNPWVEYEFRVVASNAIGTGDPSAPSRGVRTKEAVPSVAPANVSG
GNGRRHELVISWEPVSEEFQNGEGFGYIVAFRANGTRGWKEKMVTSADSTTYKYRDETFP
PLTPFEVKVGVYNNKGDGPFSKVVIIHSAEGEPREAPPDVKAHSISSSEIRVTWKPPIPG
PGRPRGYEVSYWKDTEQEESGKKQRTVKNETSMVLTGLEGNSLYLITVKGFNSIGQGPPS
PAVTAKTRKAPPAQPPANLMWIQEGNNVSLNWDPVKAKDNESDVIGYMVLLKQEGRGHNQ
VTRTINPSTMLSLPEGGTYIIEVRALSEGGEGAVSSQVRVVTSSGVRAKSNQCSVHCLPQ
SLTWTALLLVLLVPSASW
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggggtcaccatggaaaccatttctcctcttgtctatcatcagtggcctttcagatttt
gcaagagctgttgcagcacggcctatatcatatgcagcagtattacgaatgaaaccagac
agctcttcgtcactgctcaactcgcgcagcagacctcgacagcaccacagtggtgggctg
gtgactcctgactggcctgctttctccagtcaccccctgtcagccttgagtctgctcagc
tctcaggaggactaccggagtgaagaaagtgaagagtttgggcctgtttttgcccaggag
ccagatgatgttatttttcctttggattctgatgaaaagaaagtggtgatgcattgtgaa
gcacgggggaatccaccacccacttacagttggtacatcaatgggacagaggtggatgca
gaggcagattaccgctacagcttcatcgatggaaacttaattattaccaatgcaagtgag
atcactgaccatggaaagtaccagtgtaaagcagagaacagttttgggaccatcctgagt
cgagacgctctattacagtttgcatatcttggtgctttcagtgggaagaccagaggtggg
gtttctgtgcgtgaaggccaaggtgtggtactcatgtgtaccccccctcctcattcacca
gagattatctacagctgggtgtttaatgagttcccctcgtttgttgctgaggacagtcgg
cgcttcatctcccaggacacaggaaacctctacatctcaaaggtgcagccctctgacgta
ggaagttacatctgtctggtgaagaacacggtgacaaatgcaagggttctgagccctcca
acacctctaacactgaaaactgacggtgtcatgggtgaatatgagcctaaaattgaagtg
catttccctacatctgttctggctgccaaaggagtcactgtgaggctggagtgctttgct
ctggggaatccggtgccaacaatcacgtggaggaagattaacggcaacatccccaagaaa
gcaaggctccggaagtcccaggctgtgctggagattcccaacattcaactggaggactcg
ggaacctatgagtgtaaagctgagaatccaagaggaggcactgctttcaaaggacatctg
caggtctacaccttccctcagtgggtcagaatgattaatgatactcagatggatagtgga
gagaaactccaatgggagtgcaaggccacagggaggcccaggcccacctatcgctggctt
cgtaatggtgtgcccttgacatcccagggtcgacttgaaatagtgaatggagatctcacc
attcacaaagtgcagcagacggactcaggaatgtaccagtgtgttgcagaaaataaatat
ggagccatctactccagtgcagaactgaagattttagcgtcagcacctgtttttgtcccc
aatcctgtacgggtcattgccacacttggaaaagatgtatcactggaatgcaaacccaga
gcatcgcccaaaccacggataacatggaagagaggagacagaaggatacagccaaataaa
aggattatgttgttacggaacaacactctgagaattgttaactccagccgagcggatgag
gggaactatgtgtgccgggcagagaatcagttgggctcggcagagatgactgccatactg
tgggtaaaagaggccatgcgtgtggagcttagcccgatcagagtggaggtgactgtgggg
gagagcgtggtgctgagctgcaaggcaacacatgacacatcgctggatgtggctttccag
tggttcttcaaccagaaaccgataaacttccagcaggatggcggccactttgaatacatc
caaacagtaagagcaagacagtcttcaacagtggatctgatgattaggagcattttgttg
aagcacgctgggaagtatgggtgtcgagcccagaccagtgctgacactgtatttgcagag
tctgaactgcttgtgcgaggtcctcctggaccccctggagtggtgatcgtggaggagatc
acagataccacagccaccctttcctggactcgtggcctagacaaccacagccctatcagc
acctataatttacaggcccgcagccccttttcattaggctggcaaactgtcaaaacagac
ccagacccagtgacaggggacatggagtcagccattgctgtggagctcaacccctgggtg
gaatatgaatttagggtggtggctagcaatgcaattgggactggagatcccagtgcacct
tcaagaggagtaaggaccaaagaagcagtcccatcagtggcaccagcaaacgtcagtgga
ggaaatggccgcaggcatgaactggtcatctcatgggagcctgtatctgaggagttccaa
aatggtgagggctttgggtacattgttgcatttcgtgccaacggaacccgaggctggaag
gagaagatggtgacttcagctgattctacaacatacaaatacagagacgagaccttccct
ccccttaccccatttgaagttaaggtcggagtatacaacaataagggagatgggccgttc
agcaaagttgtcatcatccactctgctgagggggagccgagggaagcaccacctgacgtg
aaagctcacagcatttcatcatcagaaattagggtcacttggaaaccgccaatccctggc
cccggaagaccgaggggatatgaggtcagctactggaaagacacagagcaggaagagtca
ggaaaaaaacaaagaactgtgaaaaacgaaacatccatggtcttgacaggactagaaggc
aacagtctgtatctcatcacagtaaaaggcttcaacagtattggccagggtcctcctagt
cctgctgtcacagccaagaccagaaaagcccctcccgctcaacctccagccaacctcatg
tggattcaagagggcaacaacgtgtctttaaactgggacccagtgaaggcaaaagacaat
gaatctgatgtcatcgggtacatggtattactcaaacaggagggcagaggccacaaccag
gtgacgagaaccataaacccttccaccatgctatcactgccagagggaggcacctatatc
attgaggtgcgtgccctcagcgaagggggagagggagcagtcagctcccaagttcgagtt
gtcacctcctccggtgttcgagcaaaaagcaaccagtgctcagtgcactgcctgccacag
agcctaacatggactgcactgctcctggttcttctggtgccttcagcttcctggtga
DBGET
integrated database retrieval system
