KEGG   Lates calcarifer (barramundi perch): 108876230
Entry
108876230         CDS       T04895                                 
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108876230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108876230
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     108876230
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 108876230
NCBI-ProteinID: XP_018521115
UniProt: A0A4W6CFX7
LinkDB
Position
LG21:20518396..20522376
AA seq 220 aa
MEVCGSSNVSLREFGCEQSLLSRPDGSASFIQGDTSVLAGVYGPAEVKVSKEIYDRATLE
VLIQPKVGLPSVRERSQEQCVRETCEASLLLSLHPRSSLTLILQVLHDDGSLLSCALNAA
CMALMDAGLPMSCLFCGVTCAIDTDGQIITDPTAAQEKESRALMTFAIDSTERRVLMSST
KGSFTVHELQQCIAVSQKASEKIFQFYRDSVRRRYSKTLE
NT seq 663 nt   +upstreamnt  +downstreamnt
atggaggtgtgtggttcttcaaatgtttccctaagagagtttggctgcgagcagagctta
ctgtctcgaccggacggatcagcgtctttcatccaaggagacacaagtgtgttggctgga
gtttatggacctgctgaggtcaaagtcagcaaggaaatctatgaccgggcaacactggag
gtgttgatacagcccaaagtaggactgccaagtgtgagggagcgatcacaggagcagtgt
gtgcgagaaacctgcgaggcatctctgctgctgtcgctccatcctcgctcctcgctcact
ctcattcttcaggtgttgcatgatgatggctcactcttgtcctgtgctctgaacgctgcc
tgtatggctctgatggatgcaggcttgcctatgagttgcctgttctgtggagtgacctgt
gccatcgacacagacggtcagatcatcacagaccccactgcagctcaggaaaaggaaagt
cgagctctgatgacctttgctattgacagcacagaacgcagagtattgatgtcatcaacc
aaaggatcatttacagttcatgagctgcagcagtgtatagcagtcagtcagaaagcctca
gagaagatcttccagttctacagggactctgtcaggcgacgatactccaaaaccctagag
taa

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