Lates calcarifer (barramundi perch): 108876230
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Entry
108876230 CDS
T04895
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108876230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108876230
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
108876230
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
108876230
NCBI-ProteinID:
XP_018521115
UniProt:
A0A4W6CFX7
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Position
LG21:20518396..20522376
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AA seq
220 aa
AA seq
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MEVCGSSNVSLREFGCEQSLLSRPDGSASFIQGDTSVLAGVYGPAEVKVSKEIYDRATLE
VLIQPKVGLPSVRERSQEQCVRETCEASLLLSLHPRSSLTLILQVLHDDGSLLSCALNAA
CMALMDAGLPMSCLFCGVTCAIDTDGQIITDPTAAQEKESRALMTFAIDSTERRVLMSST
KGSFTVHELQQCIAVSQKASEKIFQFYRDSVRRRYSKTLE
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgtgtggttcttcaaatgtttccctaagagagtttggctgcgagcagagctta
ctgtctcgaccggacggatcagcgtctttcatccaaggagacacaagtgtgttggctgga
gtttatggacctgctgaggtcaaagtcagcaaggaaatctatgaccgggcaacactggag
gtgttgatacagcccaaagtaggactgccaagtgtgagggagcgatcacaggagcagtgt
gtgcgagaaacctgcgaggcatctctgctgctgtcgctccatcctcgctcctcgctcact
ctcattcttcaggtgttgcatgatgatggctcactcttgtcctgtgctctgaacgctgcc
tgtatggctctgatggatgcaggcttgcctatgagttgcctgttctgtggagtgacctgt
gccatcgacacagacggtcagatcatcacagaccccactgcagctcaggaaaaggaaagt
cgagctctgatgacctttgctattgacagcacagaacgcagagtattgatgtcatcaacc
aaaggatcatttacagttcatgagctgcagcagtgtatagcagtcagtcagaaagcctca
gagaagatcttccagttctacagggactctgtcaggcgacgatactccaaaaccctagag
taa
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