Lates calcarifer (barramundi perch): 108876277
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Entry
108876277 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: serine and arginine rich splicing factor 2a
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108876277
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108876277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108876277
Spliceosome [BR:
lcf03041
]
Common components
Common spliceosomal components
SR proteins
108876277
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBD_AKAP-17A
RRM_8
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
108876277
NCBI-ProteinID:
XP_050922498
UniProt:
A0AAJ8DKZ9
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All DBs
Position
LG23:6152811..6156315
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AA seq
228 aa
AA seq
DB search
MSYGRPPPDVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFV
RFLDKRDAEDAMDAMDGALLDGRELRVQMARYGRPPDSMYSRRGAPPRRYGGYGRRSRSR
SASPRRRRRSRSRSRSRSRSRSRSRHHYSRSRSRSYSRSRSRSRSKSKSKSKSRTPRRSK
SKSPSRSRSRSRSKSRSRTPPSNRGSKSRSRSKSKSRPKSPEDNGAES
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgagctacggaaggccgccgccagacgttgaggggatgacctctctcaaagtggacaac
ctgacttatcgaacttcgccggagaccttgcgtcgcgtttttgagaagtatggccgcgtg
ggagatgtttatataccccgggataggtacactaaggagagccgcggcttcgccttcgtg
cggttcctcgacaagcgcgacgccgaggacgccatggacgctatggacggcgcgctgctc
gacgggcgggagcttcgggtgcagatggcccgctacggacgaccaccggactcaatgtac
agccgaagaggtgcaccgccacgcagatatggagggtacggacgcagaagcaggagccgt
tcagccagcccccgtcgccgcagacgtagccgcagccgttccaggagcagaagccgttcc
cgatccaggagccgccaccactacagccgctccaggtcccgctcatactccagatccagg
tcaaggtccagatccaagtctaaatcgaagtccaagtccagaacccccagacggagcaag
tcaaagtctccctccaggtcccgctcccgctccagatccaagtcaaggagtcgaaccccg
ccttccaacagagggtccaaatcgaggtccaggtccaaatccaagagtagacctaaatca
ccagaggacaacggagccgagtcttaa
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