Lates calcarifer (barramundi perch): 108876288
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Entry
108876288 CDS
T04895
Name
(RefSeq) activating signal cointegrator 1 complex subunit 3
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108876288
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108876288
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
108876288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
AAA_22
AAA_19
Helicase_PWI
Piezo_TM25-28
YxiG
Motif
Other DBs
NCBI-GeneID:
108876288
NCBI-ProteinID:
XP_018521210
UniProt:
A0A4W6EQJ9
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All DBs
Position
LG15:complement(17230103..17378545)
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AA seq
2201 aa
AA seq
DB search
MSPPRLTGALRSFSYVSKKEDFTEYHYDLKTKRLKRQELFAKEGLTWQKIVHFCTEHQDK
AKHQAASQELKSLLLAAKQIVGTEHGQEAIESAAVFLFETFHNKDHVGTEETRAIKQMFG
PFPSAAAEASSNCVARLVSLLGNSRVEDFIQNSHHNPQRGSTFGRNIIFSYDCYTLDPLE
DLPCSDIHDENVSLDFINFLNNQQSGRKACNEEEVSSSARVSSSGDGAILRTEVEKYLNR
GNMISSSPEELCTSLFEMLASHKSDDELQNELFELLGPEGLEMISTLLQRRVAIVDSLLT
IPPDRIAFQPDVSQKVEMTKPIYGCQVTIQSEQEKQMMKMYRREEKKERKRGKGTDDSDA
SDAVMTFDPREMRAQREQALLTARREPVLSRERVYERIQYPNVYDIYAEATKMPAFVGGA
RMLLPEGIRRENNKMYEEVEIPPNEPMPIGFEEKPVYISELDEIGQLVFKGMKRLNRIQS
MVFETAYNTNENLLICAPTGAGKTNIAMLTVLHEIRQHLQPGGVIKKDEFKIVYVAPMKA
LAAEMTNYFSKRLEPLGITVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKSVGDVAL
SQIVRLLILDEVHLLHEDRGPVLESLVARTIRQVESTQSMIRILGLSATLPNYLDVAAFL
HVNPYIGLFFFDSRFRPVPLGQTFVGIKTTNKIQQLHDMEEVCYNKVLEQVKAGHQVMVF
VHARNATVRTAMGLIEMAKNLGDICFFQPDQGPDYGQCEKQIQRSRNKQMREMFPEGFGI
HHAGMLRSDRSLMESMFSKGHLKVLVCTATLAWGVNLPAHAVIIKGTQIYDAKRGALVDL
GILDVMQIFGRAGRPQFDKYGEGTIITTHDKLSHYLTLLTQQNPIESQFLDSLADNLNAE
IALGTVTNVEEAVKWLSYTYFYVRMRANPLVYGINHKAYQMDPALELYRRELVVESGRKL
DKARMIRFEERTGYFASTDLGRTASHFYIRYNTIETFNELFNSQRTEADILNIVSKAEEF
EQLKVRDEEMEELEQLLCNYCELSAAGGVENGYGKVNILLQTYIGRGEVDSFSLISDLSY
VAQNAARIIRALFEIALRKRWPAMTYRLLTLCKVIDKRLWGFAHPLRQFPNLSHVVLNRL
EEKKLTVDKLKEMRKDEIGHMLHHVNVGLTVKQCVHQIPSITMEASIQPITRTVLRVRLL
VTPDFRWNDQVHGSVGEPWWLWVEDPINDHIYHSEYFLLQKKQVVTAEPQHIVFTIPIFE
PLPSQYYIKAVSDRWLGAEAVCIINFQNLILPERHPPHTELLDLQPLPVTALGNRQYESL
YKFTHFNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAMFRVFNKYPTSKVVYIAPL
KALVRERIEDWKIRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNR
SYVQKVAILIIDEIHLLGEDRGPVLEVIVSRTNFISSHTSKSVRVVGLSTALANARDLAD
WLGIGQVGLFNFRPSVRPVPLEVHIHGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIF
VSSRRQTRLTALDLIAYLATEDNPKQWLHQDEREIEDIIATVRDSNLKLTLAFGIGMHHA
GLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVVVKGTEYYDGKSRRYVDYPIT
DVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLTVLSDHLNAEIAA
GTISSKQDAMDYITWTYFFRRLVMNPSYYNLEDISHESINKYLSSLVERSLRDLECSYCM
EIKEDDRTIEPLTYGRIASYYYLKHQTIRMFKERLKAELSIHELLSILTDAEEYAELPVR
HNEDQLNSQLAQQLPLQVNPHSYDSAHTKTHLLLQAHFSHAQLPCSDYTTDTKTVLDNAI
RICQAMLDVAANEGWLVTAISICNLVQMIVQGRWLHDSSLLTLPHVEQQDLYLFRKWANR
KGRRDTGGFSGPIEGLPELIAACMGKERIFADIVGQEFQSTQIAQAWSFLSHVPVLELEM
SVKGWWEEYQEQTERPLPAAGANLREESSWLCVHADQEYVLQVSLRRINMGQQRRKQDSK
AQAPRFPKVKDEGWFLVIGEVDRRELLAVKRVGYVRNHTAVSVAFYTPEKTGKCIYTLYL
MSDSYLGLDQQYDIHLNVMPASIAAQVNTEVSDSVTDMTLS
NT seq
6606 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccacggctcacaggtgcactgcgctccttctcttatgtcagcaaaaaggag
gacttcactgaatatcactatgatctgaagaccaaacgtctgaagaggcaggagctgttc
gccaaagagggcctcacttggcagaagattgtccatttctgcactgagcatcaggacaaa
gctaagcaccaagctgccagtcaggaactgaagagcctccttctggcagccaaacagatt
gtggggactgaacatggtcaggaggccattgaaagtgctgctgtgtttctttttgagacc
tttcacaacaaagaccatgtgggcacagaggagacccgcgccattaaacagatgtttggc
ccctttccgtcagctgcagctgaagcctcctccaactgtgtggctcggcttgtgtctctt
cttggaaactccagagttgaagactttattcagaactcccatcataacccccaacgaggc
tccacttttggacgtaacatcatcttctcatatgactgctacacattggacccgctagag
gatctgccctgctctgatatccatgacgagaatgttagcctagactttatcaacttcctc
aacaaccagcagagtgggagaaaggcctgcaatgaggaagaggtgtccagctcagcaaga
gtgtccagctctggagatggagctatccttagaacagaggtggagaagtaccttaacaga
ggaaacatgatctcatccagcccagaggagctgtgcacatccctgtttgagatgctggcc
tcccacaagagtgacgatgagctccagaatgagctgttcgagctgctgggtccagaaggg
ctagagatgatctccaccctcctccagcgaagggtggccatcgtcgactctctcctcact
atccctcctgataggattgccttccaaccagatgtgagccaaaaagttgaaatgaccaag
cccatctatgggtgccaggtgaccatccagtcagagcaggaaaaacagatgatgaagatg
taccgcagggaggagaagaaagagaggaagagaggcaaaggaacagatgacagtgatgct
tcagatgctgttatgacctttgaccccagagagatgagagcccaaagggagcaggccctt
ctgaccgcgcgacgtgaacctgttctgagcagggaaagagtgtatgaacgtattcaatat
cccaatgtctacgacatctatgcagaggccacaaagatgccagcgtttgttggaggagcc
aggatgctgctccctgagggaattcgcagagagaacaataagatgtatgaagaagtggag
atcccacccaatgaacccatgcctatcggctttgaagaaaagcctgtctacatctctgaa
ctagatgagattggacagcttgtgttcaagggtatgaagcgtctgaacaggatccagtcc
atggtgtttgagaccgcctataacaccaatgaaaaccttctgatctgcgctccaactggt
gctggcaagaccaacatcgccatgctgactgttcttcacgagatccgtcaacacctgcag
ccgggcggtgtcatcaagaaggatgaattcaagatagtatatgtggctccaatgaaggcc
ttagcagcagagatgactaattacttcagcaagagactggaaccactgggtatcactgtt
aaagaactcactggagacatgcagctaaccaaaggagagatactgcgaacacagatgttg
gttacgactccggagaagtgggatgttgtgaccaggaagagcgtcggagatgtggctctc
tcccagattgtgcgtctactgatcttagatgaagttcatcttctccatgaagatcgagga
ccagtactggagagcctggttgccaggaccatcagacaggtggagtccacccagagtatg
atcaggatcctgggactatcagccaccctgcccaactacctggatgtggccgctttccta
catgtcaatccctatattggccttttcttctttgacagtcgcttcagaccggtacccctt
ggccagacctttgttggcatcaaaaccaccaacaagatccagcagcttcatgacatggag
gaggtttgttacaacaaagttctggagcaggttaaagctggtcatcaggtgatggtgttt
gtccatgctcgtaatgctacagtgaggacggccatgggactgatcgagatggcaaagaac
cttggagacatatgcttctttcaaccagaccagggtccagactacggccagtgtgagaaa
cagattcagcgctccagaaacaagcagatgagggagatgttcccagaaggttttggaatt
caccatgctggcatgctgcggtctgaccgcagcctcatggagagcatgttctccaaaggc
cacctgaaggtgctggtctgtactgccaccctggcctggggagtgaacctgccggcccat
gcagttatcatcaagggtactcaaatctacgatgcgaagcgcggtgccctcgtggatctg
ggcattctggatgttatgcagattttcgggcgtgcaggtcgtccacagtttgacaagtat
ggtgagggcaccatcattaccactcatgataagctgagtcattacctgaccctgcttacc
cagcagaaccccattgagagtcagttcttggacagcctggcagacaaccttaacgctgag
attgctttggggacagtcaccaatgtggaggaggcagtgaagtggcttagttatacttac
ttctatgttcgcatgagggccaacccactggtgtatggcatcaaccacaaggcgtatcag
atggatcccgccttggagctgtacaggagggagctggtggtggagtctggtaggaagctg
gataaggccaggatgatccgctttgaggagcgtactggctactttgcctccactgatcta
ggcaggaccgccagccacttctacatcagatacaatactatagagaccttcaatgaactt
ttcaactctcagcgaacagaagctgatatcctcaatattgtgtccaaggccgaggagttt
gaacagcttaaggttcgtgatgaagagatggaggagctggagcagttgctgtgcaactat
tgtgagctgtcagctgcaggtggggtggagaatggctatggcaaggtcaacatcctgcta
caaacgtacattggccgaggagaggtagacagcttctcgctcatctcagacctgtcatat
gtggcacagaatgctgctcggatcatcagggctttgtttgagatcgccttgaggaagagg
tggccggccatgacctaccgacttctcaccctctgtaaggtgattgacaagcggctctgg
ggctttgcccaccctcttcggcagttccccaacctgagtcatgttgtactgaaccgctta
gaggagaagaagctcactgtggacaaacttaaggagatgagaaaggatgagataggtcac
atgctgcaccatgtcaacgtcggcttaacagttaaacagtgtgtccatcagatcccctca
atcaccatggaggccagcatccagccaatcacacgcaccgtcctgcgtgtccgtcttctt
gttacacctgactttcgctggaatgaccaggtccatgggtcagtgggtgagccatggtgg
ttatgggtggaggatcccatcaatgatcacatctatcactctgagtacttcctcttgcag
aagaaacaggtggtgacagcagagcctcagcacatagtattcaccatccccatctttgag
ccgttaccatcccagtactacatcaaggcagtgtctgatcgctggcttggggctgaggct
gtctgcatcatcaacttccagaacctcatcttacctgagagacaccccccacacactgag
cttctggacctgcagccgttaccagtgacagctctgggtaaccggcagtacgagagcctg
tacaagttcactcacttcaaccccatccagactcagatcttccacacactgtatcacacc
gacactaatgtcctcctgggggcgccaacaggctctggaaaaaccattgcagcagagatg
gcaatgtttcgggtcttcaacaagtatccaacctctaaggtggtgtatattgctcctctg
aaggccctggttagagaaaggattgaggactggaagatcagaattgaggaaaaacttgga
aagaaagtggtggaactgacaggagatgtgactccggacatgagagctatagcacaggcc
gacctcattgtcactacaccagagaagtgggatggagtgagccgaagctggcagaaccga
agctacgttcagaaagtagccattctcatcatcgatgagattcacctgctgggtgaagac
agaggtccagtgttggaggtcattgtgtccaggaccaacttcatctcctctcacacttct
aaaagtgtcagagtagtcggtctgtccacagctctggccaatgctcgagacctcgctgac
tggctgggaattggacaggtgggtttgtttaacttccgtccgtctgttcgccctgtacca
cttgaagttcacatccatggtttcccaggacaacactactgcccccgcatggccagcatg
aacaagcccacgttccaagcgatacgcagccactccccagccaagccagtgctgatattt
gtctcatcacgacgtcaaactcgactgactgccctggaccttattgcctacctggccaca
gaggacaaccccaaacagtggctgcatcaggacgagagagagatcgaagacattatcgcc
acagttagagactccaacctgaagctgacgctggcctttgggatcggcatgcatcatgca
ggcctgcatgaaagagacagaaagactgtggaggagctgtttgtcaactgcaagattcag
gtgttgattgccaccagtactctggcctggggcgtgaacttccccgctcacctggtggtt
gtcaagggaactgaatactatgatggcaaatccaggcgctatgtggactaccccattaca
gatgttcttcagatgatggggcgagcaggtcgacctcagtttgacgaccagggcaaagca
gttattctcgtccacgacatcaagaaggatttctacaagaagttcctctatgagcctttc
cctgttgagtccagcctcctcactgtgctgtccgaccatctgaatgctgagattgctgca
ggaaccatctcatccaaacaggacgcaatggactatatcacctggacatatttcttcaga
cgtctggtgatgaaccccagttactacaacctagaagacatcagccatgagtccataaac
aaatacctgtccagcctggtggagagaagcctacgggaccttgagtgctcttactgcatg
gagataaaagaggatgatcggaccattgagccactgacttacggtcgcatcgcctcctac
tactacctgaagcatcagaccatccgcatgtttaaagagcgactgaaggctgagctgtcc
atccacgagttgctctccattctgacagatgcagaggagtatgccgaattgcctgtcaga
cacaatgaagaccagctgaacagccagctggctcagcagctcccactgcaggtcaacccc
cactcttatgacagcgcccacaccaagactcacctgctcctccaggcccacttcagccac
gcccagctgccctgcagtgactacaccaccgataccaagacagtactggacaacgccatt
cgaatctgtcaggcaatgctggatgtagctgccaatgaaggttggcttgttacagccatc
agtatctgcaatctggtgcaaatgatcgtccagggtcgctggctgcacgactcctcatta
ctgacgctgccacatgtggaacaacaagacctctatctgttcaggaaatgggcaaacagg
aaggggaggagagacacgggaggcttcagtggcccaatcgaaggacttcctgagctgatt
gctgcctgcatgggaaaagaacgcatttttgctgatattgtcggccaagagtttcaatcg
actcagattgcccaggcatggtccttcctgagtcatgtcccagtgctggagttagagatg
agtgtgaagggctggtgggaggagtaccaggagcaaacagagcgtcccctgcctgcagca
ggagcaaaccttagggaggagagcagctggctgtgtgttcatgctgaccaggagtacgtt
ctgcaggtgtcactgagacgcatcaatatggggcagcagaggaggaaacaggacagtaaa
gcccaggctcccaggtttcccaaggtgaaggatgaaggctggttcctggtcataggagag
gtggatcgcagggagctgctggctgtcaaacgggtcggatacgtgcgcaaccacacagcc
gtgtctgtggccttctacacaccagagaagactggaaagtgtatctacactctgtacctg
atgagtgacagctacctgggtctggaccagcagtacgacatccacctgaatgtaatgcct
gccagcatcgctgcccaagtcaacacagaggtgtctgactcagtgactgacatgaccctc
agttaa
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integrated database retrieval system
