Lates calcarifer (barramundi perch): 108876388
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Entry
108876388 CDS
T04895
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X2
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108876388
04120 Ubiquitin mediated proteolysis
108876388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108876388
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108876388
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
U-box type E3
108876388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
108876388
NCBI-ProteinID:
XP_018521377
UniProt:
A0AAJ7LGN2
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All DBs
Position
LG6:complement(11327649..11346355)
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AA seq
1190 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGQTSQPSTPLSTPLTSPQRETPPGPLHGPSGAAPQPLPPAA
SQSLGLSVHSGTPATSPMGTSGVAYGSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDID
TASCEKSMSQVDVDSGIENMEVEDSDRREKRNLTEKETSASSDVSEEQALQLICKILRVS
WKEQDRDVIFLPSLAAEFHQNPKDAYSDFKDLIGQILMEVLMMSTQSRIHNPFASLTATS
QPIAAAKSPDHRLTLVQPSSLGGSPMGPSAGSFGASSLSSLGACGGGMSCDSASDRFTIE
ACKETEMLNYLIERFDSVGMEERKAPKMCSQPNVSQLLSNIRSQCISHVALVLQGTLTQP
RSPLQQSLLVPYMLCRNLPYGFIQELARITHQEEEVFRQIFIPILHGLALAVKECSFDSD
NFKFPLMALAELCEIKFGKTHPVCNLVTSLPLWCPKPLSPGCGREIQRLSYLGAFFSLSV
FAEDDTKVGDKYFSGPAITMENTRVVSQSLQHYLESARGDLFKVLHNILLNGETRDLALN
YMAALVNYNVKKAQMQTDDKLVSTDGFMLNFLWVLQQLSMKIKLETVDPYYIFHPRCRLA
VSLEETRLKATMEELKTWLSELHEDPTKFSEPKFPTECFFLTLHTHHLSILPGCRRYIRR
LRAIRELNRTVEELKNSESQWKDSPLASRHREMLKRCKTQLQGQFNILKLVRAKACADVG
LLDENLLRRCLQFYSTVIQLILRMVDPAYPNITLPLNPEIPKSFAALPEFYIEDVAEFLL
FVVQYSPQVLYEPCVQDIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRFS
EMMENHPLSVKQLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTF
MEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWEQLPREQQQSRQ
SQLTQDERVSRSYLALATETVEMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKC
RDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMRKA
GIKSSIAIEKFKLLSEKVEEIVAKNSQSEMDYSDAPDEFKDPLMDTLMTDPVMLPSGNIM
DRSIILRHLLNSPTDPFNRQPLTESMLESVPELKERIHAWMREKQGGRLV
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaggaattgagcgcagatgagattcgcaggaggcgactggcgagactggcaggggga
cagacatcacagcccagcacccctctcagcacacccctgacatccccacagagagagact
ccacctggacccctccatggaccctcaggtgccgcacctcagcccctgccaccagctgcc
tcccaatcgttggggctcagtgtccacagtggtacccctgccacatcccctatgggcacc
tctggggtggcatatggtagtcagagcagcgagggtgtcagctccctctccagctctccc
tccaacagccttgagactcagtcccagagtttgtcccgatcgcagagcatggacattgac
actgcctcctgtgaaaagagcatgtcccaggtggatgtggactcagggatagagaacatg
gaggtggaggacagcgatcgcagggagaagaggaacttgactgaaaaggaaacctctgca
agctcagatgtctctgaagagcaggctctgcagctcatttgtaagatcctccgcgtatcg
tggaaggagcaggacagagatgtcatctttctcccttcactggctgcagagtttcaccag
aaccctaaagatgcatactctgacttcaaagacctgattggccagatcctgatggaagtc
ttaatgatgtccacccagtcacgtatccacaaccccttcgccagcttgacagccacatct
cagccaattgcagcagccaaatctcccgaccaccgtctgacgctggtgcagccctccagc
ctaggtggcagtcccatgggccccagtgcagggtcctttggagccagctctctgtccagt
cttggtgcatgtggaggagggatgtcctgcgattcagccagcgaccgcttcaccattgaa
gcatgcaaagagacagagatgctgaactacctcattgagcgttttgacagtgttggcatg
gaggagaggaaagctcccaagatgtgcagccaaccaaatgtcagccagcttctcagcaac
attcgctctcagtgtatttctcatgttgcccttgtcctgcaaggcaccttgacccagcct
cgaagccctctccagcagtctctgctggtaccttatatgctgtgtcggaaccttccatat
ggctttattcaggagctggcacgcattacccaccaggaggaagaagtgttcagacagatc
ttcattcccatcctccatgggctggctcttgcagttaaagaatgttcttttgacagtgac
aactttaaattccccctcatggcattagctgagctttgtgaaatcaagttcgggaagact
caccccgtgtgtaatttggtaacgtcactgcctctatggtgtcccaaacctctgagccct
ggttgtggccgagagatccagagactgtcctacctgggagccttcttcagtctctctgtg
tttgctgaggatgataccaaagtaggagacaagtatttctcgggcccagccatcaccatg
gagaacacgcgagttgttagccaatcactgcagcactacctggagtcagcaaggggtgac
ctgttcaaagttctccataacatcctactaaacggagagacacgagacttagctcttaat
tacatggcagctttagtcaactacaatgtgaagaaagctcagatgcagactgacgacaaa
ctggtgtctacagacggcttcatgctcaacttcttatgggtgctgcaacagctgagcatg
aagatcaagctggagacagtggacccttattacattttccacccacgctgtcgccttgct
gtcagcctagaagaaacacgtctaaaggctactatggaggagctcaaaacctggctaagt
gaactgcatgaagaccccaccaagttctcagaacccaaattccccaccgagtgtttcttc
ttgacactgcacacccaccatttgtctatcctgcctggctgcaggcgctacatccgcagg
ttgcgagccatccgtgaactcaataggactgtagaggagctgaaaaacagtgaaagccaa
tggaaagattctcccctggccagtcgacacagagagatgctcaagcgatgcaaaacccag
ctgcaaggtcagtttaacatccttaaactggtgcgagccaaagcttgtgctgacgtgggc
cttctggatgagaacctgctccgcagatgtctgcagttctacagcacagtcattcagctc
attctccgcatggtggaccctgcctaccccaacattaccctgccactgaaccctgagatt
cctaaaagctttgctgctctccccgaattctacattgaagatgtggccgagtttctgctt
tttgttgtgcagtattcaccccaggttttatatgagccgtgtgtccaggacattgtcacc
ttcttggtggtgttcatctgcagccagaactacatcaggaacccctaccttatcgccaag
ttggtggaggtgctgttcgtcaccaaccctgctgtacagcctcgtactcagcgattttct
gaaatgatggagaaccacccgttgtccgtcaaacagctggtccccgccctcatgaagttc
tacactgatgttgagcataccggcgccaccagcgagttctatgataagttcactatacgg
taccatatcagcacgatcttcaagagtctctggcagaacattgcgcaccatggcaccttc
atggaggagttcaactctggcaagcagtttgtgcgctacatcaacatgctgataaacgac
accaccttcttgttagacgagagccttgagtccctgaagcgtatccacgaggttcaagaa
gagatgaagaataaggagcagtgggagcagttgcccagggagcagcagcagagccgccag
tcccagctgactcaggatgagcgggtgtctcgctcttatctggctctggccacagagaca
gttgaaatgttccacatcctcacgaagcaggtccagaagcctttcctcaggcctgagctg
gggcctcgtttagctgccatgctgaactttaaccttcagcagctctgtggacctaagtgt
cgtgacctgaaggtggagaaccctgaaaagtatgggtttgagcccaagaaactcttagac
cagttgacggacatctacctgcagctagactgcgcccgcttcgctaaagcaattgcagac
gaccagcggtcgtatagccgtgagctctttgaggaggtgatctcaaagatgaggaaagcc
ggaattaagtcctccatcgccatcgaaaaattcaagctgctgtcggaaaaggtggaagaa
attgtcgccaagaactcccagtctgaaatggactacagtgatgcacctgatgagttcaaa
gaccccctgatggacacgctgatgactgaccctgtgatgctgccttctgggaacatcatg
gaccgatctatcatcctacgccacctgctcaactcccccactgatcccttcaacaggcag
ccactcacagagagtatgctggagtcagtccctgagctgaaggagaggatccatgcctgg
atgagagagaaacagggcggacggcttgtctaa
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integrated database retrieval system
