Lates calcarifer (barramundi perch): 108876397
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Entry
108876397 CDS
T04895
Symbol
l1cama
Name
(RefSeq) neural cell adhesion molecule L1.2 isoform X1
KO
K06550
L1 cell adhesion molecule
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108876397 (l1cama)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108876397 (l1cama)
04090 CD molecules [BR:
lcf04090
]
108876397 (l1cama)
04091 Lectins [BR:
lcf04091
]
108876397 (l1cama)
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
L1 family
108876397 (l1cama)
CD molecules [BR:
lcf04090
]
Proteins
108876397 (l1cama)
Lectins [BR:
lcf04091
]
I-type lectins (Siglecs)
108876397 (l1cama)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
fn3
Ig_2
V-set
Bravo_FIGEY
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
C2-set_2
C2-set_3
V-set_CD47
Ig_J
DUF4998
Motif
Other DBs
NCBI-GeneID:
108876397
NCBI-ProteinID:
XP_018521387
UniProt:
A0AAJ7LEI2
LinkDB
All DBs
Position
LG6:13110267..13150830
Genome browser
AA seq
1284 aa
AA seq
DB search
MPHTQRQQVGSRGQCSSRLLPLLLLLLPFAAQPSQAAIHIPFNYHISDLKRPPVITTQPE
SVTVFSVEDLVMSCEASGNPPPIFRWTKDGEEFNPGSDPELKVTEDTGSFAFYTLSNTMD
TLKRYQGKYVCYASNELGTAVSNEAILTTDAPPTQQKEKKVNVKSEQGSSIVLKCNPPQS
SMEPIIHWMDSTLHHIQLSKRVVAGKDGNLYFAHLTTKDSRNDYTCNVQYLTTRTILTKE
PIILTVSPSNSVVRSKRPQMMRPTGSHSTYHALRGQTVELECIVQGLPTPDVSWLRKDGE
LSESRTTKEMFDRRLRFSNISESDGGEYQCIATNSQGKVTHTFTVIVEAAPYWTKEPVSQ
LYAPGETVRLDCQADGIPSPAISWTINGIPLSAIDKDPRRSVTPSGSLILNDVNFGDTAI
YQCRASNKHGTILTNTNVYVINLPPQILTEDGNTYTFTEGQKALLECETFGSPKPKVIWE
NGNASSLLADPRVNLLTNGGLEISNVTHNDEGSYTCFVQNTNNNLSITAELEVLNRTVIL
SPPQALKVQPGNTAIFTCLAQVDPKLGPQLILWRKNNQKLFESETDEKYTFEGPDLIITN
VGPDDEGVYTCEIITKLDMASANGTLTLCDRPDPPFQLQITDPKRREVTLSWTPGDDHNS
DVLEYVVEFEDQGSKERGWEELKRVRGDKERASLPLWPYMSYRFRVIAINDVGKSDPSKP
SEIHNTPAEAPDNNPEDVRSESADPDTLVIMWEEIDKRNFNGPNFIYRVLWRRAVGSGPD
WHINVTTAPPFIVSGVGNFSAFEIKVQAVNEKGQGPEPDPVIGYSGEDVPLEAPMDVGLV
LVNSTTIKMTWAPIDKQTVRGHLLGYKIYLNRTGSRAHPRAKESEGSMVVVTGPNVEKKV
ISGLRPFSHYELAVAVFNSKGEGPGSETLSFRTPEGVPGPPMSLVLDSPSETEMTLHWTP
PSQPNGILIGYLLQYQRIVESDDSPMQVVTIEDPTVTRLTLGTPLDRHSHYRFYLRGRTA
AGDGEPIMRVGATTLDGEPPANISLSVGENSVNLSWVTKKRHRNVSFQILYLNKNDGSKW
KRTEKVNSSQSFYQLQGLTPGSHYRLRFIHKNTTFWETDIETEGTGVKEVQTSFATQGWF
IGVVSAIVLLLLILLILCFIKRSKGGKYSVKDKEEGPMDSEARPMKDETFGEYRSLESDL
EEKRTASQPSLCEESKLCSEDNLDFNGSSAITTELNIDESLASQFSRPSEGPEVLHGLPD
NSPLNPTTVSPATNGMPNSVTILD
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacacgcagcgacagcaggttggcagtagggggcagtgctcctcccgcctcctc
cccctcctccttctcctcctaccctttgctgcccagcccagccaagcagccatacacata
cccttcaactaccacataagtgatctcaagaggcctccagtgatcaccacgcagccggag
tctgtcaccgtcttcagcgtcgaagacctcgtcatgagctgtgaagcctccggcaaccct
ccacccattttccgatggacaaaggatggggaggagtttaacccaggcagtgacccagag
ctgaaggttactgaggacacaggctcattcgcattctacacactcagtaatactatggac
accctgaaacggtaccaaggcaaatacgtctgctacgcatccaacgagctggggactgcc
gtctctaacgaggccatactcaccaccgatgctcctccaacacagcagaaagaaaagaag
gttaatgtgaagtctgaacagggaagcagtattgttctgaagtgcaaccccccacagagc
tctatggagcccatcatccactggatggacagtacactacaccatatccagcttagtaag
cgagtggtggcagggaaggatggtaacctatactttgcccatttgacaaccaaggacagc
cggaacgactacacctgcaatgtccaatacctgacgacacgcaccattctgacaaaggaa
cccatcattctgactgtcagcccctccaactcggtagtacggagcaagaggccccagatg
atgagacctactggaagccacagcacttaccacgccctcaggggccagactgtggaactt
gagtgcatcgtccaaggccttccaactcctgacgtgtcgtggttgaggaaggatggtgag
ctgtccgagtcacgaaccacgaaagaaatgttcgaccgccgcctgcgcttcagtaacatc
tcagagagcgacgggggcgagtaccagtgtatagccaccaactcccaaggaaaggtcaca
cacaccttcactgtgattgtggaagctgctccctactggaccaaggagccagtcagtcag
ttatatgctccaggtgagactgtcagactagactgccaagcagacggcatcccctcccct
gccatcagttggaccatcaatgggatccccctgtcagcaatcgataaggaccctagacgt
tcagtgacaccaagtggatctctaatcctaaatgatgtcaactttggagacactgccata
taccagtgtcgggcctccaacaagcatggaaccatcctcaccaacaccaacgtttatgtc
atcaacctgcctccacagatcctcacagaggatgggaatacatacacatttacagagggc
cagaaggctttactggagtgtgagacctttggttctcctaaacctaaagtcatatgggag
aatggcaacgcctcctccctgctggctgatcccagagttaacctcctcaccaacgggggg
cttgagatctctaatgtcacccacaacgatgagggctcctacacctgctttgtacagaac
accaacaacaacttgtctatcactgcagagctggaagtcctcaacaggacagtgatcctg
tcgccaccacaggctctgaaggtgcagcctggaaacacagcaatcttcacctgtctggcc
caggttgaccccaaactcggacctcaactcattctgtggagaaagaacaatcagaagctg
tttgagtccgagactgatgaaaaatacacatttgaaggaccagacctgataataactaat
gtgggaccagatgatgagggtgtgtacacctgtgagatcatcaccaagctggacatggct
tcagccaacggcaccctcactttatgtgatcgcccagaccctcctttccaactccagatt
actgatcccaagcgtcgtgaggtcaccctcagctggactcctggagatgaccacaacagc
gatgtgctagagtatgtggttgagtttgaggaccaaggttcgaaggagaggggttgggaa
gagctgaagagagtaagaggggacaaagagcgtgctagtctccctctgtggccctacatg
tcttaccgtttccgggtcattgcaatcaatgatgtgggcaagagtgaccccagcaaacca
tctgaaatccacaacacacctgctgaagctccagataataaccctgaagatgttaggagt
gagtctgcagacccagacactctggtcatcatgtgggaggaaattgacaaacgcaacttc
aacgggcctaacttcatatacagggtgctgtggaggcgagcagtgggtagcgggcccgac
tggcacatcaacgtcacaactgcaccgccattcattgtcagtggtgttggcaacttctct
gcatttgagatcaaagttcaggctgtcaatgagaaaggtcaaggacctgagccagacccg
gtcattggctactcaggagaagatgtaccattggaggctccgatggatgtgggtcttgta
ctagtgaacagcaccaccatcaaaatgacctgggcaccaatagacaagcagacggtcaga
ggacacctgcttggatacaagatctacttgaacaggaccggctctagggcccaccccagg
gccaaagagtcagaaggcagtatggtggtggtgactgggcctaacgtggagaagaaggtg
atcagtggtctcagaccgttctcccactatgaactggccgtcgctgtgttcaacagcaag
ggagagggacctggctccgagacgttgtccttcaggactcctgaaggagttcctggtcct
cccatgtccctggtgttggacagcccatcagagacagaaatgaccctccactggacgcct
cctagccagcccaatggaatcctcatcggatatctacttcaataccaacggattgtggag
agcgatgacagccccatgcaggtagtgacaatagaagatcccacagtcacccgcctcacc
ctggggacccccctggaccgtcacagtcactaccgattttacctgagggggcgcactgct
gctggggacggagaacccatcatgagggtgggcgccaccacactggatggagagcctccc
gccaacatcagcctgtctgtgggggaaaactcagttaacctcagctgggtgaccaaaaag
agacacaggaatgttagcttccagattctctacctcaacaagaatgatggcagtaaatgg
aagaggacagagaaggtgaactcctctcagtctttctaccagctccagggtctgactcct
ggctctcattaccgtctacgcttcatccacaaaaacaccaccttctgggagactgacatt
gagacagaaggaacaggagtgaaggaggtgcagacaagctttgcgacgcagggctggttc
atcggtgtcgtgagtgccattgtgctgctgctgctgatactgctcatcctctgctttatc
aagaggagtaaagggggaaagtactcagtgaaagataaagaagaaggtccgatggactca
gaggcacggcctatgaaagatgagacttttggagagtacagatctctagaaagtgatctc
gaggagaagcgcacggccagccagccgtccctgtgcgaggagagcaagctgtgcagcgag
gacaaccttgacttcaatggcagcagtgccataaccacggagctcaacatagatgaatct
ctggccagccagttcagtcggcccagcgagggtccggaggtgctccatggcctgccggac
aactccccgctcaaccccaccaccgtctcccccgccaccaatggcatgcccaactcagtc
accatcctcgattaa
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