Lates calcarifer (barramundi perch): 108876475
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Entry
108876475 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: la-related protein 4
KO
K18763
la-related protein 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108876475
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108876475
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
La
HP0268
Se_S_carrier
Motif
Other DBs
NCBI-GeneID:
108876475
NCBI-ProteinID:
XP_018521522
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Position
LG6:12594907..12608369
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AA seq
825 aa
AA seq
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MSSDQSGEPPLLQEEADPGPKTGGKDEAPLGSEGGSGGMVTSKGAGLNPNAKVWQEMPVA
PSEAVTNSPHWPPSDISEGYSEPSSAGCKQYTVGFTALDDSGSTATAEIAVNGMDPPELG
FSPAESTTGTSVDSKAEEQPISSENLRESLKKELEFYFSRENLSKDLYLMSQMDSDQFVP
IWTIASMEGIKVLTTDMDLILDVLRSSPMVQVDEKGEKVRPNHKRCIIILREVPETTPVE
EVESLFKNDNCPKVISVEFAHNNNWYITFQSDTDAQQAYKYLREEVKTFQGKPIMARIKA
INTFFAKNGYRSMDSSLYAQQSQSQSQYSSPLYMQHLYPQQQYPVYGIVPPTWTPSPTPY
FETPLAPFPNSSFVNGFASAGHYKTGSSSLNITRPFNRNRVPLYSRKNVINAFRNHVKPQ
VRTSDVNPASITPVALESLTGLRSPQPPATVAAATNPVQTASDLGTAFSHLSSSSSSLDP
SDDSGMSGRGRRSTTYRGTRRRREDERIARPVPLAEVKVSPPKFDLAATNFPPLPGCVVS
TQGEPVLENRMSDVVRGLYRDKSEQANKEATVSQGSGQASVTDETAAVSSPALAAAKPAT
QPLGPSAPSVTRQEKRVERAEVPAPRATPRTPVQTTVNPSTSNSSSSSSSSSSFSSSSSS
TQPVPSSRPQPSAASTPATPSTPAPATATIPASAQEPRKLSYAEVCQRPPKDPPPAAPAP
APSGTAPGQPLRELRVNKAEEPGSSGGPGEKQEKSHDREGGWECKESRPPRERDSQGYYR
SNGPRGTGGLKFRDQRRPPPARRSSPQGGYRHTGKEQNIPPVSPK
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagaccagagcggggagccgccgctgctgcaggaggaggctgatccgggaccg
aagaccggtgggaaggacgaggctccgctggggagcgagggagggtcaggcggcatggtc
acctctaagggcgctggtttgaacccaaatgccaaggtgtggcaggagatgcctgtggcc
cccagcgaggctgtcaccaacagccctcattggcccccctcagacatcagtgagggttat
tctgagccttcgtctgctgggtgcaagcagtacactgtgggattcacagccctggatgac
agcggctccacagcaacagctgagatagcagtaaatggaatggaccctccagagttgggc
ttttcccctgctgagtccacaacagggacctcagtggattccaaagctgaagaacagcca
atctcctctgagaatctacgagagtctctaaagaaagagctggagttttatttctctaga
gaaaacctctcgaaggatttgtacctgatgtcccagatggacagtgaccagtttgtcccc
atttggactatagctagcatggagggcatcaaggtcctcaccactgacatggacctcatc
ctggatgtgttgagatcctcaccgatggtacaagtggatgagaaaggagagaaggtgcgt
cctaatcacaagcggtgcattatcatcctgagggaggtccctgaaaccacacctgttgag
gaagtggagtcactgttcaaaaatgacaactgtccaaaggtgataagtgttgagtttgca
cataacaacaactggtacatcacattccaatcagacacggatgctcagcaggcgtacaag
tatttgcgagaggaagtaaaaacatttcagggaaaacccatcatggccaggataaaggcc
atcaacacgttctttgcgaagaatggctaccgtagcatggacagcagcctgtacgcccag
cagtcccagagccagtcccagtacagctctccgctctacatgcagcacctctacccccag
cagcagtacccagtctacggcatcgtaccacccacctggacgccttcgcccacaccgtat
tttgaaactcctctggcaccatttcccaacagtagctttgtgaatggatttgcctctgct
ggacactacaaaaccggctccagttctcttaatatcactcggccattcaacagaaaccgt
gtccccctctattcaagaaagaatgtaataaatgccttcagaaaccatgtgaagccccag
gtgaggacgagcgacgtgaacccagcgtccataactcctgtcgccttggagagcctgact
gggctgcgcagcccacagcctcccgccaccgttgctgccgccactaacccagtccagacg
gcctctgacctggggacagcgttctctcatctctcctcctcctcctcctctttggacccc
agtgacgacagtggcatgtctggacgtggaagacggagcacaacctacagaggaacacgg
aggaggcgagaagacgaacggattgcgaggcctgtaccactagcagaggtcaaggtttct
ccacccaagtttgacttggccgccaccaatttcccaccccttcctggctgcgtggtcagc
acacagggagagccagtgctagaaaaccgaatgtcagatgttgtacgtggtctgtacaga
gacaagtcagaacaagccaataaagaagccactgtgagtcaaggttcaggccaagcctca
gtcacagacgagactgcggctgtctcaagtcctgccctggcagcagcaaaacctgctaca
caaccacttggaccctcggcccccagtgtcactcgtcaggagaagagggttgaacgggca
gaggtcccagctccaagagcgaccccgcgcacacctgttcagactactgtcaacccctcc
acctccaactcttcttcctcctcctcctcctcttcttccttctcctcctcctcctcctcc
acacagcctgtgcctagctccaggcctcagccctctgctgcctccacgccagcgacaccc
agcacgccggcccctgctacagccactattcccgcctctgcacaggagccacgtaagctc
agctacgcagaggtgtgccaacggccacccaaggaccctccccccgcggccccagcccca
gctccctccggcacagcgccaggccagccgttgcgtgagctgcgtgtcaacaaggccgag
gagccaggctccagcggcggccccggagagaagcaagagaaaagtcacgacagggagggg
gggtgggaatgcaaggagagccggccgccacgcgaacgtgactctcaaggctactaccgc
agcaacggccccagaggcaccgggggcctcaagttccgggaccagaggcgcccgcctccg
gcccgacgcagctccccccagggaggctacaggcacactggcaaagagcagaatatccca
ccagtatcgccaaagtaa
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