Lates calcarifer (barramundi perch): 108876573
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Entry
108876573 CDS
T04895
Symbol
hoxc1a
Name
(RefSeq) homeobox protein Hox-C1a
KO
K09301
homeobox protein HoxA/B/D1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108876573 (hoxc1a)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: HOXL
108876573 (hoxc1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
108876573
NCBI-ProteinID:
XP_018521701
UniProt:
A0A4W6FJU6
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Position
LG6:14033837..14041604
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AA seq
330 aa
AA seq
DB search
MTSYQELTAEGESSPLFTGCCRAKEVINRDLGGRTYPELGSRDEEGKPEVEVASGFNSPH
PRYLTLSNSLTLCTSSDSPPPPPPPPSSSSPLLRHYEILEGFSAPACPHSSRVPWRCRAQ
GQGSPGRGYCASNNSETRLDDDFGSLPEQIQIYSRNGPEIHVAVGSSASSDCNVADLDER
SKTFEWMRVKRSQHRAARMHMTCGFSIVGSGVGAVEAGSSSSSSSICTDVHPTVNGAPRT
SFSTKQLTELEKEFHFNKYLTRARRVEVAGALQLSETQVKVWFQNRRMKQKKLQRDGLLC
DPGPAAPHSRALDTCPSLGPNSPKHLPLNS
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgacttcctatcaagagttaacggccgaaggggagagtagccctctgttcacgggctgc
tgccgagcaaaagaggtcataaaccgggacctgggcggcagaacttatcctgaactcggc
agtcgtgatgaggagggaaaaccggaggtggaagtcgcctcaggatttaattctccgcat
cctcgctacttaactctctcaaacagtttgactctgtgcacctcttcggacagccctcct
cctcctcctcctcctccttcttcttcttcaccactactacgacattatgagattctcgag
ggcttctcggcaccggcctgcccccactcgtcccgtgtcccctggcggtgcagggcgcag
gggcagggctctccaggacgtggatactgcgcatcaaacaacagcgagacgcgactcgac
gacgattttgggtcacttccagagcaaattcaaatctattctcgcaacggccccgagatt
cacgtcgccgtgggaagttcagccagctcggactgtaacgtggctgatttggatgaaagg
agtaaaacttttgagtggatgagggtgaagaggagtcagcaccgggcggccaggatgcac
atgacctgtgggttcagtattgttggctcgggagtcggtgctgtagaggctggaagcagc
agcagcagcagcagcatctgcacggatgtccatcccacggtgaacggggccccgaggacc
agcttcagcaccaagcagctgaccgagctggaaaaggagttccacttcaacaagtacctg
acacgggccaggcgggtggaggtcgccggcgccctgcagctcagcgagacgcaggtgaaa
gtttggtttcagaacaggcgcatgaagcagaagaaattacagagagacgggctgctctgc
gacccgggccccgcggccccgcactcacgcgctttggacacctgcccctctctcggaccg
aactcgccaaaacacctgcccctgaactcctga
DBGET
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