Lates calcarifer (barramundi perch): 108876595
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Entry
108876595 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: dynactin subunit 1
KO
K04648
dynactin 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04814
Motor proteins
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108876595
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108876595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108876595
03036 Chromosome and associated proteins [BR:
lcf03036
]
108876595
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108876595
Membrane trafficking [BR:
lcf04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
108876595
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Dynactin complex
108876595
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dynactins
108876595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dynactin
CAP_GLY
Gemin7
DUF7259
Motif
Other DBs
NCBI-GeneID:
108876595
NCBI-ProteinID:
XP_050933932
UniProt:
A0AAJ8BJ03
LinkDB
All DBs
Position
LG19:20721165..20759753
Genome browser
AA seq
1266 aa
AA seq
DB search
MSQTRRNTYTRTTSSGSSRMSSDGGGRPVKVGSLVEVIGKGQRGTVAYIGTTLFASGKWV
GVILDEAKGKNDGTVQGKRYFTCEENHGIFVRQSQIQLVDDGADTTSPETPEPGTGKVPK
REILETPKSTKLRGVKPKKTPAPRKTTARRPKPSRPTGTGGKGAASGSASASAGEMSSSE
PSTPAQTPLAAPVIPTLHSPGKPPAPVPSKEEEALRAQVKDLEEKLETLKMKRTEDKAKL
KELEKHKIQLEQLQEWKNKMQEQQAELQKQLKEAKREAKEALEAKERYMEEMSDTADAIE
MATLDKEMAEERAESLQLEVDSLKEKVDELTMDLEILKHEIEEKGSDGAASSYHVKQLEE
QNGRLKEALVRMRDLSASEKQEHVKLQKQMEKKNVELDSLRSQKEKLQEEMTAAEKTIDE
LKEQVDAALGAEEMVETLTERNLDLEEKVRELRETVADLEAINEMNDELQENARETELEL
REMLDLGAAKIRESEKRVEAAQETVADYQQTIKKYRELTAHLQEVNRELTSQQEASAELQ
QQPPAEMFDFKIKFAETKAYAKAIEMELRKMEVGQANRHVSLLTAFMPESFLRHGGDHDC
ILVLLLIPRLICKAELISKQAQEKFDLNENCVERAGLKGAIGEQLSFAGGLVYSLSLLQA
TLHKYEQALAQCSVDVYKKIGSLYPEMSVHERSLDFLIDLLHKDQLDETVNVEPLTKAIK
YYQHLYSIHLADQNEDCTMQLADHIRFTQSALDCMAVEVGRLRAFLHAGQEKADLAVLLK
DLETSCSDIRQFCKKIRRRMPGTDAPGIPAALNFGQQVSDTLSDCRKHLTWVVAVLQEVA
AAGAQMMSPLGEQEGLAAVKLEDVAFKAGEQIYGSQGANPYECLRQSCSIVIATMNKMAT
AMQEGEYDSDKPQSKNPPPVDVRAAALRAEITDAEGLGMKLEDRETVIKELKKSLKIKGE
ELSEANVRLSLLEKKLDSSSKDADERVEKIQTRLDEAQTLLKKKEKEFEETMDALQADID
QLESEKAELKQRINSQSKMTIDGLRGTGPSGIASIVTGIAGANMMSGVGSGSGVQVIDSP
LLTQQIEAQRLCIKHLKNENNRLKAETMRVQLASLPPLHVTKLPSRDGGRPEVLSSALYR
KTDQLLETLLQMSANVKVVDITGKSPVTPGAQLLEQTARLQSLSDTLDRLKDEVAEHVVH
QQPGARVSSDFATFPSTTFVKAKEEKQGDTVLVGRVMVPCPRGQEQVHRLVLSQPQLQRV
HSLLRT
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagactaggaggaacacatacacccggaccactagcagcggcagcagcaggatg
agctcggacgggggcggccggcccgtcaaagtgggctccctggtggaagtgatcgggaag
gggcagcgcggcacggtggcatacatcggcaccacactcttcgcctctggaaaatgggtg
ggagtcatcctggacgaggccaagggcaagaacgacggcacggtgcagggcaagcgctac
ttcacctgcgaagagaatcatggcatttttgtgagacagtcacagatccagctggttgac
gatggagcagataccacgtcccctgagacgcccgagcccggtaccggcaaggttcccaaa
cgagagatcctggagacgcccaagtccaccaaactgcgaggagtgaagcccaaaaagact
cctgcaccccggaagaccacggccagaaggcccaagcccagccggccgacaggcaccggc
gggaagggggctgcgtccggctcggcctcggcctcggctggagagatgagcagcagcgag
cccagcaccccggcccagactcccctggctgctccggtcatccccaccctccactcccca
ggaaaacctccggcccccgtccccagcaaggaggaggaggctctgcgcgctcaggtgaag
gacctggaggagaagctggagacgctgaagatgaagcggacggaggacaaagccaagctg
aaggagctggagaagcacaagatccagctggagcagctgcaggagtggaagaacaagatg
caggagcagcaggccgagctgcagaaacaactcaaagaggccaagagggaggctaaagag
gccctggaggcgaaggagcggtacatggaggagatgtcagacactgcggatgcgatcgag
atggccacgctggataaggagatggctgaggagagagccgagtctctgcagctggaggtc
gactcgctcaaggagaaagtggacgagctcaccatggacctggagatcctcaagcatgag
attgaggagaaaggctcggatggcgctgcctccagttatcatgtgaaacagctggaggag
cagaacggccgactgaaagaagcgctggtcaggatgcgagatctgtcggcgtcggagaag
caggaacatgtgaagttgcagaagcagatggagaagaagaacgtggagctggactctctg
aggagccagaaagaaaagctgcaggaggagatgacggcggcagaaaagaccatcgacgag
ctgaaggagcaggtggatgcagccctgggggcagaggagatggtggagactctgacagag
agaaacctggacctggaggagaaagtcagggagctgagggagacggtcgctgacctggaa
gcgatcaacgagatgaacgacgagctgcaggagaacgccagagagacggagctggagctg
agggagatgttggatctgggcgcggcgaaaatccgagagtcagagaaacgagtcgaagcc
gctcaggagaccgtggctgattatcagcagaccatcaagaagtaccgcgagctcaccgcc
cacctacaggaggtgaacagagaactgaccagtcagcaggaagcctcagcagagctgcag
cagcagccgccagcagagatgttcgatttcaagattaagtttgcagagacgaaggcgtac
gccaaggccattgagatggagctgaggaagatggaggtgggtcaggccaacagacacgtc
tcccttctgaccgccttcatgcccgagtccttccttcgtcacggaggagaccacgactgc
atcctggtgctgctgctcatccccaggctcatctgcaaggccgagctgatcagcaaacag
gcccaggagaagtttgacctgaacgagaactgcgtggagcgagccggactgaaaggagcc
atcggggagcagctgagcttcgctggtggtttggtttactcgctcagtctgctgcaggcc
acgctccacaaatacgagcaggctctggctcagtgcagtgtggacgtctataagaagatc
ggctctctgtacccagagatgagcgtccacgagcgatcactggatttcctcatcgatctg
ctgcacaaagaccagctggacgagaccgtcaacgtggagccgctcaccaaagccattaaa
tactatcagcacctgtacagcatccacctggcagatcagaatgaggactgcaccatgcag
ctcgctgatcacatcagatttacccagagtgccttggactgtatggctgtggaggtcggt
cgcctgcgggcgttcctgcacgcgggtcaggagaaggccgacctcgccgtgctgctcaaa
gacctggagacgtcctgcagcgacatccggcagttctgcaagaagatccgccgccggatg
ccgggtaccgacgcgcccggcatcccagcggctctcaacttcggccaacaggtgtcagac
acgctctcagactgcaggaagcacctgacctgggtggtggccgtgctgcaggaagtggcg
gcggccggagctcagatgatgtcgcccctcggtgagcaggaggggctggcggccgtcaaa
ctggaggatgtggcgttcaaggcaggagaacagatctatggatctcagggcgccaacccc
tacgagtgtctgcgacagtcctgcagcatcgtcatcgcaaccatgaacaagatggccacc
gccatgcaggagggagagtacgactcagacaagcctcagagcaagaatcctccaccggtc
gacgtgcgagcggcggctctccgagcagaaatcacagacgctgaaggtctgggcatgaag
ctggaggacagagagactgtcatcaaagagctgaagaagtctctgaagatcaagggggag
gagctgagcgaggcgaacgtccgtctcagtctgctggagaagaaactcgacagctcgtcc
aaagacgcagacgaacgcgtggagaagattcagactcgactggacgaggcccagactctg
ctgaagaagaaagagaaggagtttgaggagacgatggacgctctgcaggccgacatcgac
cagctggagtcggagaaggccgagctgaagcagcgaatcaacagccaatcgaagatgacc
attgatgggctgagaggaaccggcccgtcaggaatcgcctccatcgtcacgggaattgca
ggagcgaacatgatgtcaggcgtcggttcaggctcaggagtccaggtgatcgactctcct
ctgctgactcagcagatcgaagctcagagactctgcatcaaacacctgaagaacgagaac
aacaggctgaaggctgagacgatgcgcgtccagctcgcctctctgcctcctctccatgtg
accaaacttccctccagagacggaggtcgtcctgaagtgctctctagcgccctctaccgc
aagaccgaccagctcctggagactttgctgcagatgagcgcgaacgtcaaggtggtcgac
atcactgggaaatccccagtgacacctggtgctcagctcctggaacaaacagctcgacta
cagtccctgagtgacactctggacagactgaaggatgaagtggcagagcacgtcgtccac
cagcagcctggagctcgagtctcgtccgactttgccacgttcccctcgacgacgttcgta
aaggcgaaggaggagaagcagggtgacacggtgctggtgggtcgggtcatggtgccatgc
ccccgcggtcaggagcaggtgcatcgcctcgtcctgtctcagcctcagctgcagagagtt
cacagtctactgcggacctaa
DBGET
integrated database retrieval system
