Lates calcarifer (barramundi perch): 108876625
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Entry
108876625 CDS
T04895
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04140
Autophagy - animal
lcf04148
Efferocytosis
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108876625
04148 Efferocytosis
108876625
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108876625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108876625
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
108876625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
108876625
NCBI-ProteinID:
XP_018521781
UniProt:
A0A4W6DB14
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Position
LG19:complement(20533382..20557918)
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AA seq
876 aa
AA seq
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MHDAYEPVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQNNSGE
ERLRMCVAVKKKLQLYYWKDREFHELQGDFGAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGQNIVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVEYLQRLGVENLG
IIFEFSPWVLKNCPDDGLKIFTEDLTEVETLPRDKVLNFLKDGFKELAIPYLEHIIYVWD
EKGPEFHNVLIQLYLERVQGPMKEYLKSLPEGIPAVPAGQEGGQLGEFRNKLLTFLDIST
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHGHYNSLVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMEVSGPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESVLEEKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRNVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtatgaaccagtgcctattttggaaaagctccctcttcagattgactgt
cttgcggcctgggaggactggctgcttgttggaacaaaaccagggcatctacttctctac
cgaataaagaaagacgcaggtaccaaccggtttgaggtgacactggaaaaatccaataag
aacttctcaaagaagattcagcagctttacgttgtctcacagtacaaaattcttgtcagt
cttctggagaacaacatccacgtccatgacctcctgaccttccagcagatcactgtggtg
tccaaagccaaaggagccacactctttgcatgtgacctgcagcaaaacaactcaggagag
gaaaggttgagaatgtgtgtcgcagtaaaaaagaaacttcagctgtattactggaaggac
agggagttccacgagctgcagggcgactttggtgcaccagatattccaaagtccatggct
tggtgtgaaaactccatatgtgttggtttcaaacgagactattaccttattcggatggat
ggccgtggctcaatcaaggagctcttccccactggaaaacagttagagcctctggttgcc
ccactggctgatgggaaggtggctgttggccaagatgacctgactgttgtcctaaatgaa
gagggcgtttgtacccagaagtgtgccctgaactggacagacatccctatagcgatggag
caccagcctccatatatcattgctgttctccctcgttatgtggagatccggacctttgag
ccgagactgctggtgcagagtgtggagctgcaaagacctcgcttcatcacctcagcaggg
caaaatattgtgtatgttgccagcaaccattttgtgtggcgcctggtacctgtgtcaata
gccagccagatccggcagcttcttcaggacaagcaatttgaactggctcttcagctggcg
aagatgaaggatgattcagatggtgataagaagcagcagatacatcacatccagaatctc
tacgccttcaatctgttttgtcagaagagatttgatgactccatgcaggtgtttgccaaa
ctcggcacagatcccacccatgtgattggactgtacccggacctgctcccatcagactac
cgcaaacagctgcactatccaaaccctctgcccacactgtccggggcagagctggagaaa
gcacatctcgcccttatcgattacctcacccagaaacgcagccatctggtgaaacagctg
aatgactctgacccttccacaacatctccactcatggagggcacaccgacaattaaaagc
cgcaaaaaactccttcagatcattgataccaccctgctgaaatgttacctgcataccaac
gtggccctggtgtcccccctccttcgtctggagaacaaccactgccacatcgaggagagc
gagtatgtcctcaagaaggctcacaagtacagcgagctcattattctctatgagaagaag
ggcctgcaccagaaagctctgcaggtgctgctggaccaatccaccaaggccaactctccg
ctgaagggccatgagcgaacagtggagtacctccaaagactgggagtggagaatctgggc
ataatctttgagttttctccctgggtgctgaagaactgtcctgatgatgggctgaagatt
ttcacagaggacctgacagaggtggagacgctgccccgagacaaggtgctgaacttcctg
aaggatggctttaaggagctcgccatcccatatttggagcacatcatctacgtgtgggac
gagaaagggccagagtttcacaatgtgctgatccagctctacctggagagggttcaaggc
cccatgaaagagtacctcaagtcactgccagaagggattccagctgtccctgcaggacag
gagggtggccaactgggagagttcaggaacaagctgctgaccttcctggatatttctacc
agctacgaaccagccagactcatcagtgactttccctttgatggtctgctggaggaacgg
gctctgcttctaggtcggatgggcaaacatgagcaggcgctcttcatctatgtgcacatc
ctgaaagacacccgcatggctgaagaatactgtcacgggcactacaacagtttagttgaa
ggaaacaaagatgtttatctgtctctgctgagaatgtacctgtcaccccctgacgtccac
tgcctggggcccatcaagatggaggtgtcggggcctcaggccaacctccaggcagccctg
caggtcctggaactgcaccacagcaagctcaacaccaccaaggccatcaatctgctccca
gcaaacacacaaatccgagagatccgggttttcctggagagcgtcctggaggaaaaagct
cagaggaaacgctgcaaccaagtgctgaagagtctgctgcaggccgagttcctcagggtg
caggaggagcgaatcttccaccagcaggttaaatgtgtcattacagaggaaaagacctgc
agagtttgcaagaagaaaataggaaacagtgcatttgccaggtatcccaacggtgtggtg
gtgcattatttctgctgcaaagaccgcaatgtttgtcccactgaacagtaa
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