Lates calcarifer (barramundi perch): 108876634
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Entry
108876634 CDS
T04895
Symbol
capn3a
Name
(RefSeq) calpain-3 isoform X1
KO
K08573
calpain-3 [EC:
3.4.22.54
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108876634 (capn3a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108876634 (capn3a)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.54 calpain-3
108876634 (capn3a)
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C2: calpain family
108876634 (capn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
CAPN13-like_C_EFh
Alpha_adaptin_C
Ndufs5
Gag_FV_central
Motif
Other DBs
NCBI-GeneID:
108876634
NCBI-ProteinID:
XP_050934323
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All DBs
Position
LG19:20579757..20593639
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AA seq
265 aa
AA seq
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MHGNKQHMQKDFFLFNSSKARCKSYINLREVTQRFCLSPGEYVIVPSTYEPHQEGEFILR
VFSEKKNTSEEIENRIEADHPVPAPASAGEESEEDQQFRTIFQEIAGDDMEITANELKNV
LNRVITKHKDLNTEGFSLESCRSMIALMDMDGTGRLNLQEFRHLWNKIKQWQGIFKHYNA
DQSGSINSYEMRNAVNDAGFRLNNQLYDIITMRYANENMNIDFDSFISCLVRLEAMFRAF
QAFDQDGDGTIRLSVLEWLQLTMYA
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggaacaagcagcacatgcagaaggacttcttcctgttcaactcctccaaggct
cgctgcaagtcctacatcaacctgcgcgaagtgacccagcgcttctgcctgagccccgga
gagtacgtcatcgtcccctccacgtacgagccgcaccaggagggagagttcatcctgcga
gttttctctgaaaagaagaacacctcagaggagatagagaacaggatcgaggctgaccat
ccagtgccggcgccagcctcagcgggggaagagagcgaggaggatcagcagttcaggact
atttttcaggagatagctggagatgacatggaaatcacagccaacgaactgaaaaatgtt
ctcaacagagtgatcaccaaacataaggacctgaacacagagggcttcagtctggagagc
tgcaggagcatgattgctctgatggacatggatgggacaggtcgactcaatcttcaggag
ttcagacatctgtggaataagatcaaacaatggcagggaatctttaaacactataacgct
gaccagtctggtagcatcaacagttacgagatgaggaatgccgtcaatgatgcaggcttc
cgtctcaacaaccagctgtacgacatcatcaccatgcgctacgcaaacgagaacatgaac
atcgactttgacagcttcatcagctgtctggttcgactcgaagccatgttcagggcgttc
caggcctttgaccaggacggagatggtacaatcagactcagtgtcctggagtggctccag
ttgaccatgtacgcctag
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