Lates calcarifer (barramundi perch): 108876677
Help
Entry
108876677 CDS
T04895
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108876677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108876677
04131 Membrane trafficking [BR:
lcf04131
]
108876677
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108876677
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108876677
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
108876677
mRNA cycle factors
P-body specific factors
108876677
Membrane trafficking [BR:
lcf04131
]
Others
Actin-binding proteins
Myosins
108876677
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
108876677
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
108876677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Csm1_N
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
108876677
NCBI-ProteinID:
XP_018521858
LinkDB
All DBs
Position
LG10:10352053..10362138
Genome browser
AA seq
1744 aa
AA seq
DB search
MNMALLELYTEYNRVWIPDAEHVWKSAEIMRDFHFGDNVLELLLEDGTEHYYPVDPSKPQ
LPPLRNPDILVGENDLTALSYLHEPAVLHNLRVRFVESRIIYTYCGIILVAVNPYKQLPI
YGDAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMR
YFAVVSKSGSKTRVEDKVLASNPVTEAIGNAKTTRNDNSSRFGKYTEISFDRKYRIIGAN
MRTYLLEKSRVVFQADNERNYHIFYQMCSCAHLPEFKNLRLLSADKFRYTCMGGDITIEG
IDDKKDMDETRQTFSLLGLKEDFQSDVFKVLAAILHLGNVEIRNSGDDKSSVSPSDPHLA
VFCELLGVNAEGLVRWLCHRRIVLVAETVVKPMPKKRAVNARDALAKQIYAHLFDCIINR
INTALKVPGKQHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYM
KEDIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDQSWLQKLYNYLDANPLFE
KPRLSNEAFVIQHFADKVEYQCKGFLEKNRDALYEELVDIMRASKFPFLASFFQEEEQST
VTSKGVKVRPARPGVKPANKQLRTSVGDKFRSSLSLLMETLNATTPHYVRCIKPNDEKLP
FEYDSSRVVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYSILMLYQEADLNDKKQTCK
IVLQRLIQDPNQYKFGRTKIFFRAGQVAYLEKLRLDRLRGACIIIQKHVRGWSQRRKYLR
MREAAIILQQYIRGKRTVRKTVTAATLKQAWAAVVIQRHFRGYRMRQIYQVVRLASITIQ
AFTRGWIARKRYKKMMEEQKALVLQKYARAWLARRRFQTMRRLVLNVQLSYRVQKLRKKI
EEQNKENRGLVERLTSLANTHSQTVDRLQGVEAQLEKSTNQKASLEAREKKVKEDATLTI
AQLQKQIDVLILEKQKLEKKFETSTKEAKESFDQIKRNLLDEKENEARLRKIAENNIEIQ
RQDHEKEVETLKGEIKRLKEERVSLHRKIEEGGQVNSDLQEQVIQLTKHVKVIPELRRDL
NNLQNQRNNMDRKMKQQSEQARAKMTEITRQLLGGVVEEEVLLGLTPDDSEKIYEVEDLL
AAFEGLQKATRILESHQREQKETYETQLEGLKLKVDHLQNENSKLQNLFQEKSNVNENIR
QEVSRLSSENSVIPELKLQVSEVQRQKRELEAHVEEQKRELAEKTEEITNVLQRKIKEES
SQRMYFEEKAEELEEVKRELQGQIEELEEENDHLKRQQLMESEAKSKLRQETSRLTAENM
DFEEQLDQRDRLIKRLQNQIKSLETSQKAKQTSSPAIPKDYLGMLEYKREDEPRLIQNII
LDLRPKGVVVNMIPGLPAYILFMCVRHADYLNDEVKLKSLMNAIISAVKKVIMSHHKDFD
LLSFWLSNTYQLLNCLKQYSGEEEFMKQNTPRQKKNCLQNFDLSEHRQILSDLAIHIYHQ
FITVMEKSLTPAIVPGMLEHESLQGISSMKPTGFRKRSNSIYEDSDTHTISSIIQQLSVF
HFTMTQHGMEQGLIKQAVKQMFFLVGATTLNNIMLRKDMCSCRKGMQIRCNISYLEEWLK
EKDLQSSNAIDTLRPLSQAAWLLQVNKSTDEDAKEITEKCTELNSVQIVKILNSYTPIDD
FEKRVTSSFVRKVQSLLQDREGSTQLMLDTDYRFQVTFPFSPSSQALELIQVPNSLHLGF
LTRI
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggctttgttggaactgtacaccgagtacaaccgagtgtggatcccagatgca
gaacatgtgtggaaatcagccgagattatgagagattttcattttggagataatgttctt
gaactgctccttgaagatggcacagagcactactaccccgttgacccgtcaaaaccacag
ctccctcctcttcgcaacccagacatcttggtcggggagaatgacctcactgctctcagc
tacctccatgaacctgctgtcctgcacaatctcagagtgcgatttgtggagtccagaatc
atctatacttactgtggtattatactggttgctgtaaatccatacaagcagcttcctatc
tatggagatgcaatcattcatgcctactcaggccagaacatgggtgacatggaccctcat
atatttgcagtggcagaggaggcttacaaacagatggccagaaaccacaagaaccagtct
attatcgtcagtggtgaatctggagccggtaaaacagtgtctgctcgatacgctatgagg
tattttgctgttgtaagcaaatctggcagcaagactcgagtagaagacaaagtcctggca
tccaatccagtaacagaggcaataggaaatgcaaagaccaccaggaatgacaacagtagc
cgatttgggaaatacacagagatcagctttgacaggaagtaccggatcatcggagcgaac
atgaggacgtacctcttagagaaatctagagtagtttttcaggcagacaatgagaggaac
tatcacattttctaccagatgtgttcctgtgctcacctgccagagttcaagaacctaaga
ctgttgagcgcagataaattccggtatacctgcatgggtggtgacatcactatcgaaggt
atagatgacaagaaagatatggacgagactcgccagaccttttcactgctgggattgaag
gaggactttcagtcagacgtgttcaaagttttggcagccattctgcatctggggaacgtg
gagatcagaaactcaggagacgacaaatcatcagttagtcccagtgatccacacctggca
gttttctgtgagttgctgggtgtgaacgcagaggggctggtgcgctggctgtgccatcgg
aggattgttctggtggctgagacagtggtgaagccaatgcccaaaaagcgagcagtaaat
gccagagatgccttagccaagcagatctatgcccacctttttgactgtattattaacagg
ataaatacagctcttaaggtcccaggaaagcagcacgcttttataggtgttctggacatt
tatggctttgaaacatttgacatcaacagctttgaacagttttgtatcaactatgcaaat
gaaaagcttcagcagcagttcaacttgcatgtgttcaagctggagcaagaggagtacatg
aaagaggacatcccatggacactgatagatttctatgacaatcagccagtcattgacctg
attgaagcaaagatggggatccttgacttgcttgatgaagaatgtttgtttcctcagggc
actgaccaaagctggctgcaaaagttgtacaactacctggatgccaatcctctgtttgag
aaacccaggttatcaaatgaggcatttgtgatacaacactttgcagacaaggtggagtat
cagtgcaaaggttttcttgaaaagaacagagacgctctctatgaagaactagtggacatt
atgagagccagtaagtttccttttctggccagctttttccaagaggaggaacaaagcact
gtgaccagtaaaggcgtcaaagtgaggcctgccaggcctggggtgaaaccagccaataaa
cagctgagaacttctgtgggagataagtttcgcagctccctttccttactgatggaaaca
ctgaatgctaccaccccacactatgtgcgctgcataaagccgaatgatgaaaaactccca
tttgaatatgactccagcagggtagtgcagcagctgcgagcctgtggagtccttgaaacc
atccgtatcagtgcacagagctatccatccaggtggacatacattgagttttacagccga
tacagtatcctaatgttgtaccaggaggcggacctcaatgacaagaaacagacctgcaag
attgtgctgcagaggttgattcaggaccccaatcagtacaagtttggtcggacaaagatc
ttctttcgagctggtcaggtagcttatctagaaaagctgcgtctggaccgacttcgagga
gcctgcataatcatccagaaacacgttcgagggtggagccagaggaggaagtacctgcgc
atgagagaagcagccatcatcctccaacagtacatccgtgggaagaggacagtccgtaaa
acagtcactgctgcaacactgaagcaagcctgggcagcagtggtgattcagagacacttc
agaggttaccgcatgagacagatctaccaggtggtccgtctcgcttctatcaccatccag
gccttcacacgaggttggattgcccgtaaacgatacaagaagatgatggaagagcagaaa
gccctggttctccagaagtatgccagagcgtggctggctcgacggcgatttcaaaccatg
cgtcgcctggtgctcaatgttcagctttcgtacagagtgcagaagctcagaaagaagatt
gaagagcagaataaagagaaccgtgggttggtagagagactgaccagcttggccaacacc
cactctcaaactgtggacagacttcagggtgtggaggcacagctggaaaaatcaaccaac
cagaaggcatctttagaggcaagagagaagaaagtgaaagaggatgctactctgacaatt
gcacagcttcaaaagcagatagatgtactaatccttgaaaagcagaagttggagaaaaag
tttgaaacctccacaaaagaggccaaagagagctttgatcaaataaagaggaatcttctg
gatgagaaagaaaatgaagcaaggcttagaaagattgctgagaataacattgagatccag
agacaggaccacgagaaggaggtggaaactctgaaaggtgagattaagagactgaaagag
gagagagtcagtctgcacagaaagatagaggagggaggtcaggtgaactctgacctgcag
gaacaagtcatccagctcaccaaacacgtcaaggtcattcctgagctgcgcagagatctg
aacaacctgcaaaatcagagaaataacatggaccggaagatgaagcagcagtcggaacaa
gcaagagctaaaatgactgagattacgagacagcttcttggtggtgttgttgaagaggag
gttcttttagggctaactccagatgactctgagaagatttatgaagttgaagatttgctg
gcagcctttgaaggcctacagaaagctaccagaatactggaaagccaccagagggagcag
aaggaaacctatgagacccaactggagggtttgaaattgaaagtggaccatctacaaaat
gagaacagcaaactgcaaaacttgttccaggagaaaagtaatgttaatgagaatattcgc
caagaagtgtccaggctcagcagtgagaactcggttataccagagctgaaactgcaggtc
tcagaggtgcagagacaaaaacgagaattggaggctcatgtagaggaacagaagagagaa
ttagcagaaaaaacggaggagatcaccaacgttcttcaaaggaagattaaagaagagagc
tcacaacgcatgtactttgaggagaaagctgaagagctggaggaggtgaagagggagctt
caaggccaaatagaggagctggaagaggagaatgatcacttaaagaggcagcagctgatg
gagagtgaagccaagagcaaactgagacaggagacttcacggttaactgctgagaacatg
gactttgaagagcagctcgatcagagagacagattaataaagagactccagaatcaaatc
aagagccttgagacatcacagaaagccaagcaaacatcttcgcctgctattcctaaagat
tacctcggcatgttggagtacaagagagaggatgaacccaggctcattcaaaacatcatt
ctggacctgaggcctaaaggtgtggtggtcaacatgatcccgggtttgccggcttacatc
ctcttcatgtgtgttcgccatgctgactacctgaacgatgaagtcaaactcaaatctctc
atgaatgcaataatcagtgctgtcaaaaaggtcatcatgagtcaccacaaagactttgac
ttgctgtccttctggctctcaaacacgtatcagctgctcaactgtctgaagcagtacagt
ggggaggaggagtttatgaaacaaaacactccccgccagaaaaagaactgcttgcagaat
tttgatttgtcagagcacagacagattctcagtgacctggccatccacatctaccatcag
tttatcacagtcatggaaaagagcctcacacctgcaattgtacccggtatgttggagcac
gagagtttacaagggatttctagcatgaagccaacgggcttcaggaagcgttccaacagc
atctatgaggactcggacacccacaccatctcctctatcattcagcagctcagtgtcttc
cacttcaccatgacccaacatggcatggagcagggcctcatcaaacaggctgtcaaacaa
atgttcttcctagtgggtgctaccaccctcaacaacatcatgctccgcaaagacatgtgt
tcctgcaggaaggggatgcagatcaggtgtaatatcagttacctggaggagtggctaaag
gagaaggaccttcaaagctctaacgctatagatactctgaggccgttgtctcaggctgcc
tggcttctgcaagtgaacaagtccacagatgaggacgccaaggagatcactgaaaaatgc
actgaactcaactctgttcagattgtcaagattttgaattcatacacacccatcgatgat
tttgagaaaagggtgacgtcgtcgtttgtccgcaaagttcagtcattactacaggatcgt
gaagggtccactcagctgatgctggacacagattatcgtttccaggtcacgtttcctttc
agcccatcctctcaggctctggagctgatccaggtgccgaacagtcttcatctgggcttc
ctgaccaggatctga
DBGET
integrated database retrieval system
