Lates calcarifer (barramundi perch): 108876766
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Entry
108876766 CDS
T04895
Symbol
jmjd1cb
Name
(RefSeq) LOW QUALITY PROTEIN: probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108876766 (jmjd1cb)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108876766 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
C1_2
FYVE
zf-C5HC2
Motif
Other DBs
NCBI-GeneID:
108876766
NCBI-ProteinID:
XP_018522003
UniProt:
A0AAJ7LHM2
LinkDB
All DBs
Position
Unknown
AA seq
2922 aa
AA seq
DB search
MAVEARPELVGKRFLCVSGDEPPEIGDIGRWPWRSGVIRAVNHRDSDNPDLTVYVEFDDQ
EWEKREWVKVYEDFQLFLLEHQLVWAKRKEGAAGGGGAGAGAGAGGLLQATKAKHIQWPA
LAFKPVVGKNLLSSVTAVEFLLDQQLDFLSDHSTFQPYQDEVDSQNPVLRDNPQLHEEVK
SWLKDQKVQEIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRNMVVMNDQVLEP
QNVDPSMVQMTFLDDVVHSLLKGENIGITSRRRSRSSQNNNTAHMAGGRPGGTTGSTQSH
YTRAQANSPRPIMTSSGPNPKSSQGMLASQQHTQSQQSQQLASQLHHSPGSSGREQREQR
NSRSSRRKGSDSSVPEEDKDRREDTTGRDSKSKVKQAVNKRRKGEEDEKKAGLKRLKTDM
TSDLSESSDSENPHNKRTAHSSCSSSSSSSSSSSSSSSSSSSEPNSENELKTRSSDVKPS
AISKMEEDEKPLMQGSKINNSSSLIGRLSPWVELQAVEESKKGVVRETGKLIMKEVEELV
AVTQITQSPRQQSLMSDTIQGGIMESSKNTVKGSSPSQTPLSSHLHGSGVIEITDDAQAT
VHRESSEAVSALLASQKAESTALSPYLPLNPSPVSSPPIPPSPSPSEGGRRTDIEPPMQQ
QQGIMGGGMTAARSLVSKIEFSPSEVIRPVTSVADHVVLVEKEKTVLPHLHLHQQQQQQH
QQQHTQQQQHYTSIHPSIKTPSLPEETRKHPQQQLPPXKMNTVSTPDPAKSKMSPSPNPN
PPQLDSVKQKPQHPNNSQSHSYPNTNPTELLKVKSHPGLLDISKPKPNTSPEVSKHKIPR
YCNTSPPPTGRLSAKAEMAEPLRSGFKTVPARPESGGVSMSSSTKSPLIIDKNETFTVYR
DPALVRSDTENSAAATVSSNHVAAYLHPHLHTLHSPSPHSPCLTPASHPHATSHLLAAPH
TSALPHPHLLPPGVLPAMPPPTASLLGGHPRLDSPGGLGHLGLPHPAAAHQQQFLQGQGP
PPPPLLTQAHSGAAGLGLYPILWQYPNGTPSSYPPGLNLPPTAKWVHPENPVTVNSEASL
RRNTASPWLHQAAGSTGDGLSLLSHVPVRPASADAHRTPVKIHTHTSPPLSKASVDVHKE
DVDKKGFVDPIRTLTLAQLKQEQTDRSRTPTGKDVHLHRLYLDPLSKARLANTQDALQAA
DRASKYKEENRQILKESIEVAPFTAKIQRSSDLGMDRDRERSRDSAFPVRIPALTTPSPK
AGHAHPHVIQSEKSGYFTTLSNSVVNEPPRLYSSKELSSYYEKISGGALGVVASMGPAVQ
SQGALPLGSHSSKASLSKPPPLIKHQPEGGEGLAGKITEQLSQQVTLVQQQHQHHTGIDR
IERHSPAISPSSSSTSSAPNHHHHHHHQQQQQHQLRAMPSLHRAPVFHPPTQHALERKEA
AEREREREKEREKERERAGYGGRLSPPTLTPIQPVSLAATGSKTSAEQQKPPTLLPELRD
VKGRGNAAAITSVASAISGEIITSSTDGWRGGEMIQERGGLYSGEKGVLRGKPQAAMASV
IVRSSTSIKYGSPVGANKSGAMIHQDLPQGRFYTSKLQGECLRLGESIREPGTGRVIQSN
ANMDDMCVQYKKSSVCGMQGTIGASTINSVNRTAVSASFGAQSKCGAATCEQGHSVSTRG
ETVAHKTDVGGWALGHSGRGDHQDCFSSHTTSPGGSLPPPSPAGTPQSSPSLVPTTSGSS
QPFSSFVHLKKHKAALAAAQSRSNISTAPISITTGNSSQSVDSVDKAPIHSSPPPPSSSQ
SLSSSVDCSSSSSASGSTTPGKSSPLPNGQSSGSVSMSSGLPSNYHKLKKAWLTRHSEED
RNTTATTSSTNTKSEKLPSTITTATTTITSTSNTSNTTAMSEMIKPCTVNLSASTSSEVE
MSKDSGSKGERERQLEEKVGGATAGGGGGEERKSAPSSRRGNKRPYESGSESGGDDSDAS
ESKMEGRAKRQPKPTYKKKQNDMAKKKGDNEKEEDDMKPNGIFRSAREKTKLKLASSNGI
PRSVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQKCRECRVVRSKRGEEQAHSPVFCRF
YYFRRLSYSKNGVIRMDGFSTPDQFDDEALSLWAPGAMEESHLDQSTAKYILSFIGDKFC
QMAVTENTAATWVKKDAKLAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKA
KERRSSKDKELYSWLKCVKGQPHDHKHLMPTQIIPGTVLTELVTSMHMLRDKHNIKSHCP
CTNKQNLLTKLPATNGVSQVLQNVLNHSNKLSLVKAEPGSQQNSDPEGTKVETNGGGVGG
SSPGSDTGSAPVTPPESQSPLHFLADLAEQKSREEKKENKESVLLGKSLKEDGKKDERQP
GSPAACKTTSLVANSTEQGSTLRDLLTTTAGKLKLGSTDAGIAFAPVYSTASQTGKGGRT
MPNILDDIIASVVENKIPASRQNLTTKLSIKQEPITVVSNNNNTPPSAVAEYTKPDRKKS
VPVTAAVPEESTSQYPDIPHCWLNSRQLLWLKDHRNQNNWKLFRDCWKQGQPVLVSGIHK
RLNASLWKADSFNQEFADHQGDLLNCKDQVVSNSGIKEFWDGFEDITKRPKSKDGEPMVY
RLKDWPSGEEFMALMPSRYDDLMKNLPLPEYSDPEGNLNLASHLPSFFVRPDLGPRLCCA
YGVAASQDQDFGTANLHVEVSDVVSVLVYVGVAKGNGVLSKTGVLKRLEEEDLDEGVRRR
LKDSSETPGALWHIYLNRDMDNVREFLHKLCKEQGLEMSLDQDPIREQGWYLSRKQRQRL
LDEHGVQGWTVVQFLGDSVLIPAGAMHQVQNLHSCVQVINDFVSPEHVANSFHLTQELRP
SKEEVNYEDKLQVKNILYHCVKEAVSTLKRSISEEDDEEENS
NT seq
8769 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcgaggctcgaccagagctggtcgggaagcggttcctctgtgtcagcggggac
gaaccgcctgaaatcggcgacatcggtcggtggccgtggaggtctggggtcatacgagcc
gtcaaccatcgtgacagcgacaatcctgacctgacggtatatgtggagtttgatgatcag
gagtgggagaagagagagtgggtcaaggtctatgaggatttccagctgtttctactggag
caccagctggtctgggccaagaggaaggagggagcagcaggaggaggaggagcaggagca
ggtgcaggagcaggaggtctgctgcaggcaaccaaggccaaacacatacagtggcctgct
ctggcgtttaaaccagtggtggggaagaacctgttgtcgtcagtaacagcagtggaattc
ttgttagaccaacagctggacttcctgtcggaccattcaaccttccaaccataccaggat
gaggtggacagtcagaacccagtgttaagagacaaccctcagctacatgaagaagtgaag
agctggctcaaagaccagaaagtgcaggaaatttttatgcaaggtccgtattcattgaat
ggctaccgtgtgcgtgtgtatagacaagactcagccacccaatggttcactggcatcatt
acacaccacgacctcttcagccgaaacatggtcgttatgaatgaccaggtgctagagcct
cagaatgtggatccatccatggtccagatgacttttctggatgacgtggtccactccctg
ctgaaaggagaaaacatcggcatcacctccagacgaaggtcacgatccagtcagaacaac
aacactgcccatatggcaggagggagacccggcgggaccactggcagcactcagagtcat
tacacgcgagcccaagccaacagcccccgccccatcatgacctcatcaggccccaaccca
aaaagttcccaggggatgttggcctcccagcagcacacccaatcacagcaaagccagcaa
ctagccagccaattgcaccactcacccggcagcagtggaagggagcagagagagcagcgc
aactctcgctcttccaggaggaaaggatcagacagcagtgttccagaggaagacaaggac
aggagagaggacaccacaggaagagactccaagtccaaggtgaaacaggcggtgaacaaa
cgtaggaagggtgaggaagatgagaagaaggcaggattaaagaggctgaagactgacatg
acgtctgatctgtcagagagtagtgactcagaaaatccacacaacaagaggactgcccac
tcctcatgttcctcttcctcctcgtcatcctcatcgtcctcctcctcctcctcttcctcc
tcctcagagcccaactctgagaatgaacttaagactcgcagcagtgatgtaaaaccaagt
gccatttccaaaatggaggaagacgagaagccgctaatgcagggatccaaaattaacaat
tcttcgtctctgattggccggctgtccccatgggtggagcttcaagcagtggaggagagc
aagaagggtgtggttagggaaacaggcaaactgataatgaaggaggtggaggaattggtg
gcggtaacgcaaattacccagtctccacggcaacagtctctgatgtctgacaccattcaa
ggcggcattatggagagcagcaagaacactgtgaaagggtcttctccgtcccagacgccg
ctgtcgtcccacctccacggtagtggtgtgatcgaaatcacagatgacgcccaggccacg
gtgcaccgcgagagttcagaggcagtatcagcgctgctcgcctcacagaaggctgagtcc
acggccctctcaccttacctccccctcaacccctccccagtgtcctcacctcccattcca
ccatctccctcaccgtcagaaggaggccgcaggacagatattgaacctcccatgcaacag
cagcaaggcattatgggaggtggcatgacagctgcgaggagcttagtcagcaagatagag
ttttctccctcagaggtcatcaggcctgtcacttcagtggctgatcatgtggtgttagtg
gagaaggagaaaactgtccttcctcatcttcatcttcatcagcaacaacagcagcaacat
cagcagcagcacacacagcaacagcaacactacacatctatccaccccagcattaagacc
ccgtctttacctgaggagacaagaaaacatccccagcaacaactgccccccnacaagatg
aacacagtttccactcctgacccagccaaatccaaaatgagccccagcccaaaccccaat
ccacctcagctcgactctgttaaacagaaaccccaacacccaaacaactctcagagccac
tcctaccccaacacgaacccaactgaacttcttaaagttaagtcccacccgggcctgctt
gacatctccaaacctaaacccaacacctccccagaggtctctaaacataaaataccacgg
tactgcaatacctcaccacctccaacaggccgtttgtctgctaaagcagaaatggcagaa
cctcttcggtctggtttcaagacggtgccagcgcggccagagtcaggtggagtcagtatg
agcagcagcaccaagagccctctgatcatcgataagaacgaaacctttaccgtttacagg
gacccagcactggtccgctccgacaccgagaactctgctgccgccactgtctcctccaac
catgtggcagcctatctccatccccacctgcacaccctgcactccccgtctccccactcc
ccctgcctcacccctgcttctcacccacatgccacttcccacctccttgctgctcctcac
acctctgccctacctcatccgcaccttttaccacccggggtgcttccggccatgcctcct
cccacagcgtctctccttgggggccaccctaggctcgactctcctggcggtttgggtcac
cttggcctacctcatccggcagctgcacaccaacagcagtttctacagggtcaaggtccc
ccaccaccccccctactaacccaggctcacagtggggcagcagggctgggcctgtaccct
atcctctggcagtaccccaatggaacaccaagctcataccccccaggactcaacctgccc
cccacagctaagtgggtccaccctgaaaaccctgtcacagttaattccgaggcctctcta
cggaggaacactgccagtccatggcttcatcaggctgctggtagtactggcgacggtctg
agtttgctgagccacgttcctgtccggccagcaagtgctgacgcccaccgcactcctgtc
aagattcacacacacacaagccctccgctgtcaaaggccagtgttgatgtccataaagaa
gatgtggataagaagggctttgtggacccgatcaggactttgacattggcccagttgaaa
caggagcagacagacaggagtcgcacccccacagggaaagatgtccacttacaccgcctc
tacctagaccccctcagcaaggctcgcctggcaaatacacaggatgcacttcaggcagca
gaccgagccagtaaatacaaggaggagaatcggcagatcctgaaagagagcattgaagtc
gctcccttcaccgcaaagatccagcgctcaagtgacctggggatggacagggacagagag
agaagccgagattctgcctttcctgtccgaataccagctctcaccacccccagccccaag
gctggccacgcccatccccacgtcatccaatcagaaaagagcggctacttcaccacactg
tccaacagtgtagtgaatgagcctccaagactgtactcctccaaagagctcagctcatat
tatgagaaaatatctggtggagctctaggggttgtagccagtatgggacctgctgtgcaa
agccagggagctctgcccttgggtagccacagctccaaagcctccctctccaagccccct
cctctcattaagcaccagccagagggaggagagggcttagcagggaaaatcactgagcag
ctcagccagcaagtaacactagtccaacagcaacatcagcaccacacaggtattgacagg
atagaacgccacagccctgccatttctccctcctcctcctctacatcttcagcccccaac
caccatcatcaccaccaccaccaacagcagcagcaacaccagctcagggcaatgccatct
ctccaccgagcgcctgtcttccatccccccacacagcacgcactggaacgaaaagaggct
gcagagcgagagagggagcgagagaaggaaagggagaaagaaagggagagagcaggttat
ggtggacgcctgtccccaccaaccctcacacccatccaaccagttagcttagcagcaact
ggtagcaaaacatcagcagagcagcagaagcctcctacactgctgcctgaactcagggac
gtcaaaggtcgtggaaatgctgctgccatcacctctgtggcctctgctatcagtggggag
attatcacttcatcaacagatgggtggagaggtggagagatgattcaggaaagaggaggg
ctgtactctggagagaaaggagtgttgaggggcaagccccaagctgcaatggcatcagtc
attgtacgctcgtcgacatccattaagtatggaagtcctgttggtgctaacaaatctggt
gctatgatccatcaggatctccctcaggggaggttttatacatccaagcttcagggggaa
tgtctgaggttaggggagagtatcagagaacctggaactggcagggttatccagtccaac
gccaacatggatgacatgtgtgtccagtataaaaagtcttctgtgtgtggcatgcaggga
actattggagccagtaccataaactctgtgaacaggactgctgtttcagcctcttttggc
gcacagagtaagtgtggggcagccacctgtgagcagggtcactcagtttccactcgaggc
gagactgtagcccataaaacagatgttggtggctgggcgctgggtcactcaggacgagga
gaccaccaagactgcttcagctcacacaccacatctccagggggatcattgcccccccct
agtccagcagggacaccccagtctagtccaagcctcgtcccaacaacttctggctcgagc
cagcctttctcctcctttgtccatctcaagaagcacaaagctgcattggctgcagctcag
tccagaagcaacatctccactgctcccatatccatcacaactggaaactcttcccagtct
gtggattcagtagacaaagctccaattcacagctctccgcctccaccctcttctagccag
tctttatcatcatcagttgactgcagtagcagcagctcagcaagtgggagcacaacacca
ggcaagtccagtcccctgcctaacggccagtcatcaggatcagtctcaatgagcagtggg
ctgcctagtaactaccacaaactgaagaaagcctggctaacccgccattcagaggaggat
aggaacactactgctacaaccagttccaccaatactaaatcagagaaacttcccagcacc
atcaccaccgccaccaccaccatcaccagcacaagtaacacaagtaacactacagctatg
tcagaaatgattaaaccctgtacagtaaatctcagtgcctccacctccagtgaggtggaa
atgagcaaggacagtggaagcaaaggtgagcgagagaggcagctggaggagaaggtggga
ggagcaacagcaggaggaggaggcggggaggaaaggaaatcagctccttcatcaaggcga
gggaacaaacggccatacgagtccggctcagagagcggaggagatgactctgacgctagt
gagagcaagatggagggtcgagccaaacgccagcctaaaccaacctacaaaaagaaacag
aatgatatggccaagaagaaaggagacaatgaaaaggaggaagatgacatgaagcccaat
ggcattttcagatcagcccgagagaagaccaaactcaaactggcaagcagcaatgggatc
ccccgctctgtgctgaaggactggaggaaggtgaagaagttgaagcagacaggggagtct
ttcctgcaggatgactcgtgttcagaaattggacccaacctgcagaagtgtcgggagtgc
agggtggtccgcagcaagaggggagaagagcaggcacattctcctgtcttctgtcgcttc
tactatttcagacggctttcctatagtaaaaatggagtaatccggatggatggcttctcc
actccagaccagtttgatgatgaggccctgtccctttgggcccctggggcgatggaggag
agccacctagaccaaagcacagcaaagtacattctcagcttcataggagacaagttctgt
cagatggctgtgactgagaatactgcagccacctgggtaaagaaagacgccaagctggca
tggaagcgagcagttaggggtgtgagggagatgtgtgacgcctgcgaggcgacactcttt
aatatccactgggtctgtcagaaatgtggctttgttgtctgtctggactgctataaggcc
aaggagagaaggagctccaaagataaagagctgtacagctggctgaagtgtgtgaaaggc
caaccgcacgatcacaaacacctgatgccaacacagatcatacctggcacagtgctgaca
gagttggtaacttcaatgcacatgctgagagacaaacataacatcaaatctcactgtccc
tgcaccaacaaacagaacctcctcacaaaacttccagccaccaatggagtctcacaggtt
ctccagaatgtcctgaaccacagtaacaagttgtctctggtgaaagctgagccaggctct
cagcagaactctgatccagaaggaaccaaggtagagactaacggaggaggtgttggcgga
agcagtccaggtagtgacacagggagtgctcctgttaccccgccagagtctcagtcacca
ctgcatttcctggcagacctggcagaacagaaatccagggaggaaaagaaagaaaacaag
gagtcagtgttgctaggtaaatcactcaaggaagatgggaagaaggacgagagacagcct
ggaagtcctgcagcatgtaaaaccacctcattggtagctaacagtacggagcagggctcc
acactcagagatctgctcaccaccacagcagggaaactgaagctgggctctactgatgca
ggaatcgcctttgcacctgtctactccactgcctcacagactggaaagggtgggcggacc
atgcccaatattcttgatgacatcattgcttcagtagttgagaataaaatccccgccagc
cgccagaacctcaccaccaagctgtcaatcaagcaagagcccatcactgtggtcagcaac
aacaacaacacgcctccctctgctgttgctgagtataccaaaccagacaggaagaagtct
gtgcctgttactgcagctgtgccagaggaatcaaccagtcagtatccagacattccccac
tgctggttaaacagcagacagttactgtggctcaaagatcaccgcaaccagaacaactgg
aagctgttcagagactgctggaaacaaggacagcctgtgctggtgtcagggatccataag
cgactgaatgccagtctgtggaaagctgactcctttaaccaagagtttgcagaccatcaa
ggagacctcctcaactgtaaggaccaggttgtgtccaactcggggatcaaggagttctgg
gatggatttgaggacatcaccaagcggcccaagtccaaggatggagaacctatggtgtac
agactgaaggactggccatctggagaggagttcatggccctcatgccctccaggtacgat
gacttgatgaagaacctgccactgccagagtactccgatccagagggcaacctcaatctc
gcctcccacctgccatctttcttcgtcaggccagatctggggccacgactctgctgtgcc
tacggtgtagctgcatctcaggaccaggactttgggactgccaacctccatgtggaagtg
tcagacgtcgtgtctgttctggtctatgttggagtcgccaaaggcaatggagtcctgtcc
aaaacgggagtgttgaagcgtctggaagaggaggatctagatgagggggttcggaggagg
ctcaaagactcgagtgagacaccgggggcactgtggcatatctacctcaacagggacatg
gacaacgtccgagagttcctgcacaagctctgtaaggagcagggattggagatgtcgctg
gaccaggacccaatcagagagcagggctggtatctgagcaggaagcagcgtcagcggctg
ctggatgagcatggagttcagggctggactgtagttcagttcctgggagactctgtcctt
ataccagctggggctatgcaccaggttcagaacctccacagttgtgttcaggtcatcaat
gactttgtgtctcctgagcatgtggccaactccttccatctgacccaggagctccggccc
agtaaagaagaggtcaactacgaggataaactacaggtgaagaacatcctgtaccactgt
gtgaaggaggcagtgagcaccttgaagaggagcatctctgaggaagacgacgaggaagag
aactcatga
DBGET
integrated database retrieval system
