Lates calcarifer (barramundi perch): 108876785
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Entry
108876785 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase iota
KO
K03510
DNA polymerase iota [EC:
2.7.7.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
108876785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108876785
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108876785
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
Y-family DNA polymerases
108876785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IMS
UBM
IMS_C
IMS_HHH_1
DNA_pol_lambd_f
Cdd1
IMS_HHH
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-GeneID:
108876785
NCBI-ProteinID:
XP_050931295
UniProt:
A0AAJ8BE01
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All DBs
Position
LG13:2354021..2362030
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AA seq
713 aa
AA seq
DB search
MDSSDEEVEEDETEWKSSFVDPAPLSPAAAPGPSLHKTSGPTPAHKVILHLDLDCFYAQV
EMIRNPTLRDVPLGIQQKNIIVTCNYVARQQGLTKLMFVTDAMEKCPQLVLVKGEDLTHY
REMSYKVTELLMSYCPLVERLGFDENFMDITELVDRRLAQTPDSNNFSFKGHVYNHLCAD
VKANEYPRLALGSHIAAEVREAIHSKLGLTGCAGIATNKLLAKLVSGTFKPNQQTTLLPE
NLSDIIGCLSSLRKVPGVGHQTAKRLQALGVVSIQDLQLFPLNELVREFGSPSAQRLKNL
AAGVDDSPVTPTGAPQSLSDEDSFKKMSSTKDVLEKIQELLSSLVERMNKDGRQPQTFRL
TIRRYSATNKWFSRESRQCPIPNHIGQKITSGSSDDAVVQLVPLAMKLFQKMVDSNTTFH
LTLINVCFSNLQTRGAAISGKGSITSFFTHSATSPRKTQVCSSSQSQDDSSHITSQKTVT
TKSPQSSEAALHGFKWKQSSVVAVEDPLLQTADCSTARSDPDETNNAVTHQLPPNVDPEV
FKLLPEDIQKELLSPAYVNSLPSTSTSPSAPAVVPDVPHMTKNKSPHSFTSSKNIEDFKE
ALNKSDLSDRETTVDHHRPAGTIMFPGENVMEDGRPSFPLSSDCEFPGNVDPEVFSELPP
DVQRELMSEWKQQKPVLKIPSSRKPGRSLTTKDRKAAGKGSQANSLLKYFKPS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggacagtagcgacgaggaggtggaggaggatgaaaccgagtggaagagcagtttcgtg
gacccagcaccgctcagccccgctgctgctcctggtccaagccttcataagacatcagga
ccaacacctgcacacaaagtcatcttgcatttagacctggattgcttctatgctcaggtg
gaaatgatcagaaacccaacacttagggacgtccctttaggtattcagcagaaaaacatc
atagtcacctgtaattatgtggcaagacaacagggtcttaccaaactgatgtttgtgact
gatgctatggagaaatgtcctcagctggtgctggttaaaggagaagacctgacacactac
agagaaatgtcctataaagtgacagagctcctgatgtcctactgtccactggtagagagg
cttggatttgatgaaaacttcatggacatcacagagctggtagacagaaggctagcacag
acaccagactccaacaacttttcatttaaaggacatgtctacaatcatttatgtgcagat
gttaaagccaatgagtacccgaggctggctttaggttcgcacatcgcagcagaggtgaga
gaagccatccacagcaaactgggcctgaccggctgtgccggcattgccacaaataagcta
ttggccaaactggtgtctggcaccttcaaacctaatcagcaaaccaccctgctgccggag
aacctgagcgacatcataggctgcctgagcagtctccgcaaagtaccaggggtgggtcac
caaactgctaagagacttcaagctctgggagtggtcagcatccaagacctacagctcttc
ccactgaatgagttggtgagagagtttggaagtcccagtgctcagcgcttaaagaatctg
gctgctggcgttgatgactcacctgtcactcctaccggggcccctcagtctctcagtgat
gaagactccttcaaaaaaatgtcatcaactaaagatgttttggagaagattcaagaactc
ttgagcagtctggttgaaaggatgaacaaagacggcaggcagcctcaaaccttccggctc
accatccgtagatactcagcgaccaacaagtggttcagtcgggagagtcgtcagtgtcct
atccccaaccacatcggacagaagatcacctctggcagcagtgatgatgcggtggtccag
ctggtcccgttagccatgaagctcttccagaagatggtggacagcaacaccaccttccac
ctcaccctcatcaatgtttgcttcagtaacctgcagaccaggggagctgccatcagcgga
aagggctccataacatctttcttcacacatagcgcaacgtctcccagaaaaacacaagtc
tgctcatcatcacagagtcaggatgattcctctcacatcacctcacaaaagacagtaacc
acaaaaagcccccagagctccgaggcagccttacatgggttcaaatggaaacagagctct
gttgttgctgtagaagaccctctgcttcagacagcggactgcagcacagcaaggtcagac
cctgatgaaacaaacaatgctgtgactcatcagttacccccaaatgttgacccagaagtg
ttcaagcttctcccagaggacatccagaaggagctgttgtcccctgcctatgtaaactcc
cttcccagcacctctaccagtccatcagcaccagctgtagtccctgatgtccctcacatg
acaaaaaacaaatcaccacactcatttacaagctccaaaaatattgaagactttaaagag
gccttaaacaaatcggatctatctgacagagagaccaccgtggatcaccacagacctgcg
ggcacaattatgtttccaggagagaacgtcatggaagacgggagaccgtccttccccctg
tcttctgactgcgagttcccaggaaatgtggaccccgaggtgttttctgagcttccgccg
gatgttcagagagagttgatgtctgaatggaagcaacagaagccggtcttgaagatcccc
tcatccaggaaaccagggagaagcttgacgacaaaagacagaaaggctgcaggaaaaggc
agccaggcaaacagtctgttgaagtatttcaaacccagttag
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