Lates calcarifer (barramundi perch): 108876846
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Entry
108876846 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 5
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108876846
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108876846
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
108876846
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_23
MMR_HSR1
Bac_rhamnosid_N
Motif
Other DBs
NCBI-GeneID:
108876846
NCBI-ProteinID:
XP_018522132
UniProt:
A0AAJ7LHN1
LinkDB
All DBs
Position
LG23:complement(17210421..17232816)
Genome browser
AA seq
1680 aa
AA seq
DB search
MYFIPEASIRETSRPYVIQMRHAGSMQPMRRRDAGVWHQTRSLLYKNLLIKWRTKQQSLQ
ELILPLLLLGLLILISTLNPHVYYGGISTMELERDEHFFKGLGYTPITNITNHIMEEVAQ
EMHMQDRLEMFASEEDLENASLYEPSSYVGVVFMDSSATSYRLRFPYNQLPLPSDYTESI
ANCFTSSVNCRAANYWYSGFIRLQSLIDAAIIQMQTKRSVWSEMDLKVVMMGQPGSVEVQ
KFPHALISIYLVLAFTPFVTFLIVNVAAEKEHRLKDTMTMMGLYDTAFWLSWGLLYAALV
TTMSILMSIIATYTALFPNSDFFVIFFLIFLYGISSIFFSFMLTPLFKKPKFASTVGSML
TVVFGCLSLFTVLMKDFPQPLVWVLCLLSPSAFSIGIAQVVYLEAQGDGAVFSSLANGPH
PLYVPLIMLVLDCILYLLLAVYLDQVLPGEFGMRRSLVYFLKPSYWSKRTKHYVEVSSVY
DTEVNGTPGGDESVEPVSPEFRGKEAIRSINIRKVYKEKDNMVEALRGLTFDIYEGQITA
LLGHSGAGKSTLMNILCGICPPTNGSATIYGSPVAEIADGSEMKQLVGICPQFNIIFDVL
TVEEHLKIFAAIKGIPPADIDAEVTKVLKDLDLEKIMTAQAKNLSGGQKRKLSVGIAILG
DPKILLLDEPTAGMDPCSRHQVWSLLKSRRAGRVTVLSTHYMDEADILADRKAVISQGQL
KCVGSSLYLKIKCGVGYHLRMSTNEQCEAEKITSLVKQHVPKAKLSRQHEAELTFTLPFE
SMDTFAGLFSELDCQPNLGIINYGVSMTTLEDVFLRLEAEAEVDQADYSVFNREQPEDEC
DNASLDDTDQRLLTFSDNKSDVVSGHALWRQQFSTVAWLHMLNMRRERKAFVYTLALFLV
FVAAVLVLSLATGNIQIHSPDRQFLPIYLLKRNQAPRRYTTSLLVQNSSGSDISDFIHNL
ESQDIKVEMMKHSDYMAAAPHSAAINVTGSSKGFRYSVAFNSTTVHSLPMAVNVLSNALL
RGLNGTGHIRTWTKPFDYQIPDATSYALVYIEAIILGMLAAGMPAYFAMDHTRDREIKCR
STLRISGLVPSAYWCGQAAVDIPFYYLILSCMTIILFSFHTGNLLTSSNLTSVVLCTVGF
GPAMILFTYVFSFGFARVQSNRDFFSVISMMVCVVSASLVQLSFVNDNPGLTRNLHNLLC
FFNPLYPLMGCLNCITKATFLPSHYEENFLWKNLLIAVVAPYLQCILLLFLLRWLEIHYG
GRTMKNDQFCRISSKSKPKVEKNPEEGLNEDEDVQMEKARVKEALTCQSCEEKPVVVVSN
LRKQYKGRREGFSLNKRRKVATKNISFCVRKGEVLGLLGPNGAGKSTVMHMLSGDTDPTA
GQVLMGDYSTEFNPVDNPLEHVGYCPQVNPLWPRITLQEHLEIYAAIKGLRGHEVPGIIK
RVVNALELKDHLNKQAKSLSAGLKRKLCFALSMIGNPQIVLLDEPSSGMDPKSKQRMWRA
IRAAFKNRQRGAILTTHYMEEAEAVCDRVAIMVSGQLRCIGSIQHLKGKYGRGYSLEVKL
REELTGLQQVALLHKEILRIFPHAARQESFATLMVYKIPMEDVKSLAKSFAQLESAKQIF
NFEEYNFSQSTLEQVFMEFAKEQENEEDEVGSLSTTFQWQRLRQDGSVSVNNTDSIVHQL
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcatacctgaggccagcattagggagacttctcgtccgtacgtcatccagatg
aggcatgctggaagcatgcagcccatgcgtagaagagatgctggagtctggcaccaaaca
agaagtcttctctacaagaatctgcttatcaaatggaggaccaaacaacagagtcttcag
gaattgatcttacctctgctactgttgggtctcctgatactcatcagtaccctcaatcct
catgtttactatggaggcatcagcactatggagctggagcgggatgaacacttcttcaag
ggcctgggctacacaccaatcactaacatcaccaaccacatcatggaagaggtggcccag
gagatgcacatgcaggatcgtttggagatgtttgccagtgaagaggacctggagaacgcc
agcctgtatgagccttccagctatgtgggtgttgtcttcatggacagctctgccacatca
tacagactacgcttcccatacaaccagctgcccctgcccagcgattacacagaatctatt
gccaactgttttaccagctccgtgaactgcagagcagctaattactggtactctggtttc
attcgtctccagtctctgatcgatgcagccatcatccagatgcagacgaagcgctcagtt
tggagtgagatggaccttaaggttgtaatgatgggtcagccaggttctgtggaggtgcag
aaattcccccacgccctcatctccatatacctggtcctggcctttacacccttcgtcacc
ttcctcattgtcaatgtggcagctgagaaggaacaccgtctgaaagacaccatgaccatg
atgggactctatgacactgccttctggctgtcatggggccttctgtatgctgctctggtg
accacaatgtccatcctgatgtccatcattgctacgtacacggcgctgttccctaacagt
gacttctttgtcattttcttcctcatcttcctctatggaatatcatctatctttttctcc
ttcatgctgactccgttatttaagaagcccaagtttgccagcacagtgggctccatgttg
acagtggtgtttggctgcctgtcgcttttcaccgtgctgatgaaagacttcccacaaccg
ttggtctgggtcctctgcctgctctctcccagcgccttctcaattgggattgcacaggtg
gtttacctggaggctcagggagatggagctgtgttttcttccttggccaacggccctcat
cctctttacgtgcccctgatcatgctggttctggactgcatcctttaccttttgttggct
gtttacctggaccaagtactgcctggtgagtttggaatgaggaggtccttggtgtacttt
cttaaaccatcctattggtccaaacgcacaaagcactacgttgaagtgagctcagtatat
gacacagaggtgaacggcactcctggtggggacgagtccgtcgagcctgtttcacctgag
ttcagagggaaagaagccattcgatcaatcaacatccggaaagtgtataaagagaaggac
aacatggtggaggctctgagaggtttaacatttgacatttatgaaggccagataacggct
ctgctgggacacagcggggctggaaagtccactctcatgaacatcctttgtggcatctgt
ccacccaccaatggctcagccaccatctatggctcccctgtagctgagattgcagatggg
tcagagatgaagcagctggtgggaatctgtcctcagttcaacatcatctttgatgtgctg
actgtggaggagcacctgaagatatttgcagccatcaaagggatcccaccagcagacatt
gacgcagaggttaccaaagtgctgaaggatctggacttggaaaagattatgactgctcag
gccaagaatctgagtggaggccaaaagaggaagctgtctgtgggcattgccattctagga
gatcccaagatcctgctcttggacgagcccacagcaggcatggacccatgctccaggcac
caggtctggtcgctgctgaagagccgcagagctggtagagtcactgtcctcagcacacac
tacatggatgaggctgacattctcgctgatcgcaaagctgtgatctctcaaggacaactg
aaatgtgttggctcttcactgtatctcaagatcaagtgcggtgttggatatcatctcaga
atgtctactaatgagcaatgtgaagctgaaaagatcacatcattggtcaagcagcacgtt
cccaaggcaaagttgtctcggcaacacgaagcagagttgactttcactctgccttttgag
agcatggacacatttgcaggcttgttctcggagcttgactgtcaacctaatctaggaatt
atcaactatggggtttccatgacaacactggaagatgtttttctacgtttggaggcggag
gctgaagtggaccaagcagactacagcgtgtttaatcgggagcagccagaggatgaatgt
gacaatgcctctctggatgatacagaccagcggctgctcacgttctcagacaacaagtcc
gatgttgtgtcaggtcatgctctgtggcgacagcagttcagcactgtggcttggctgcac
atgctcaacatgcgcagagagaggaaggcctttgtttacaccctggctttgttcctggtg
tttgttgctgcagtgctcgtcctgtcactggccactgggaacatccagattcactcacct
gaccgtcagtttctgcccatttacctcctcaaaaggaaccaggcaccccggagatacacc
actagccttctggttcagaactcctcaggctctgatatttctgactttatccacaacctg
gagtctcaggacatcaaagtggagatgatgaaacacagtgactacatggccgccgctccc
cacagtgccgccatcaacgtaactggatccagcaagggtttcagatacagtgttgcattc
aacagcaccacagtccactctttgcctatggctgtcaatgtactgagtaacgctcttcta
agaggcctaaatggtactggacatatccgaacctggaccaaaccatttgattatcaaatc
ccagatgctacatcctatgccctggtgtacatagaggccatcatactgggaatgctagca
gctggaatgcctgcatatttcgcaatggaccacacacgagacagagagatcaagtgtcgc
tctacactgcgaatctctggtctggtaccatcggcctactggtgtggccaggcagcggtg
gacatccccttctactacctcatcctgtcctgtatgaccatcatcctcttctccttccac
actggaaacctgctcacctccagcaaccttacctctgtggttttatgtactgttggcttc
ggtccagctatgatcctcttcacctatgtgttttcctttggctttgcccgagtccagagc
aacagggatttcttctctgtcatctccatgatggtgtgtgtggtatcggcctcgctggtt
cagctgtcatttgtgaatgacaaccctggactgaccagaaacctacacaacctcttgtgt
ttcttcaaccctctgtaccctcttatgggctgcctcaactgtatcaccaaggcgaccttc
ctcccctctcactatgaggagaatttcttgtggaagaacctgcttattgcagttgtagct
ccctatctccagtgcatcctgctgcttttcctgcttcgttggctggagatccattacgga
gggaggacaatgaaaaatgatcagttctgcaggatctcatccaagtcaaagcccaaagtt
gagaagaacccagaagaagggttgaacgaggatgaggatgtacagatggagaaggccagg
gtgaaagaggctctcacctgccagtcttgtgaggagaaaccagtcgtggtggtgagtaac
ctgaggaagcagtacaagggcagaagagaaggattttctctcaacaagaggaggaaagtg
gccacgaagaacatctctttttgtgtacgcaaaggtgaggttcttggactgttgggcccc
aatggagcaggaaagagcaccgtcatgcatatgctgtcaggtgatactgatcccactgca
ggccaggtgctaatgggggactacagtacagagtttaatcctgtggacaaccccctggag
catgtgggttattgtccacaggtgaaccctctgtggcccaggatcactctgcaggagcac
ctggagatctacgcagccataaaggggctgagaggacacgaagtaccagggatcataaaa
cgagtggtgaatgctctggagctgaaggaccacttaaacaagcaggccaagagcctgtca
gcaggactcaagaggaagttgtgctttgccttgagtatgatcgggaatcctcagatcgtc
ttgctggatgagccatcttcagggatggaccctaagtctaagcagcgcatgtggagagct
atacgggctgctttcaagaatcgtcagcggggagccatcctcaccacacactacatggag
gaggccgaggccgtctgtgaccgcgtagctatcatggtttctggccagctgaggtgtatt
ggctctatccaacatttaaaagggaaatacggccgaggttacagtttggaggtgaaactc
agagaggagctgacggggcttcagcaggtggcgctgttacacaaagagatccttcgaatc
ttccctcatgctgcccgacaggagagctttgctactctgatggtttacaagatccctatg
gaggatgtcaaatcactggccaagtctttcgcacagttagagagcgccaagcaaatcttc
aactttgaagagtacaacttctcccagtcgaccttagagcaggtgttcatggagtttgcc
aaggagcaggagaacgaggaggatgaggtgggctccctcagcacgactttccagtggcag
cggctgcgccaggacggctctgtttcggtcaacaacacagacagcatcgtgcaccagctt
tga
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integrated database retrieval system
