Lates calcarifer (barramundi perch): 108876903
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Entry
108876903 CDS
T04895
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108876903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108876903
03036 Chromosome and associated proteins [BR:
lcf03036
]
108876903
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108876903
Coactivators
SAGA/TFTC/STAGA complex
108876903
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108876903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
108876903
NCBI-ProteinID:
XP_018522220
UniProt:
A0A4W6E8C4
LinkDB
All DBs
Position
LG2:complement(20975907..21058844)
Genome browser
AA seq
1077 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLTGQSNPAGKTDENGGAGSVPPANHHLGK
TLPAPVGTTTLEQQQQGRRNKPEMRQEINSKDVSPDKAVTSPSLGCTPSFGEPPTTSAAC
VNATSSGSQSHGASITTLTASGVSTLASPPASISTTSSRGSKVTPGTGETSTEANPARKR
ITTPRRSASARIKSLNGAAVTTRRNSSTAVGENASPVDPGATTPNSTRPVTSSINTSTFT
LSNASLPVGQSAIALDRGTPTIALHRLPNHIVASIAQNGNGTSVSALVQQGARIGPVTSP
ASQENHSKTVTDTGASKTDDCQSKIVMSSQSGSVNSVINTVSSAPSVVTPTTTTTAAATT
TTTVTQPLSSATVAACVTGVATSSVCGTGQTTSVTTTVSMVRPTAPSPTPAVATSAQSQP
RPGLTAPQRIVAPQLIVRPPQQQTTIQLPPGFTIPPGMVLVRTELGQLVMVPQQALAQAQ
AQAQAQAQAQNNISPRPATPTTGTSFRVTTPQSPVTSQTTRQCPLTPAKMVPSPSPTPSS
PALQTSSSSSSSSSSSCPALRPKGPVAPAVAVTAPQQTPVVMAPQAPAQAASQPAQPPQT
GIAAAPGGPVVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKALVQDLLDAKIEP
EEFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLNSQQSLTQPPQQGVKPAPGGIPPAI
VAGPAVRIRHPNSVSTTTGASALPAGTLGHAAAMGIKTAGAVGGQVRMPVVITQSVRAQG
TMGKGAVIQAGKSPVGLAVQISGNQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESAR
ILATNSELVGTQIRSCKDEAFLHPGLLHRRILETAKKFGVTEVPMEAVTFISHATQSRLR
TVVEKVSTIAQHRLDSCKDDECYEQSADVRSQLRFFEQLERIEKQRKDEQEREILLKAAK
SRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDSPGATPSGTE
VSGSTAGSPASSSVPSTSSRQYTRQRITRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcctccgaccccctggaagatatgctcttttcagaggtggatgaaaaagct
gtgagcgacctagtaggctcgttggagtcacagcttactggccaaagcaacccagcaggt
aaaacagacgaaaacggaggcgctggctcagtgccccccgctaaccatcacttaggaaaa
acgctaccagctccagtgggcaccacaacactagaacaacaacaacaaggacggcgtaat
aaacctgagatgcgccaggagatcaactctaaagacgttagcccggataaagctgtcaca
tctccttctctaggctgtaccccgtcttttggcgagcctcccaccacttcggctgcctgt
gtgaacgccactagcagcggttcgcaatcacatggagcatccatcacaacactgactgca
tctggtgtgtcaactttggcatctccgccagccagcatcagcaccacatccagccgcggc
tctaaggttaccccaggcacaggtgagacgtcgacggaggctaacccggcgagaaaacgc
ataaccacgccacggaggagcgcttcggctcggataaagagtttaaacggcgcagcggta
acgacgagaaggaacagcagcacagcggtgggcgaaaacgctagccccgtggaccccggt
gcaactacaccaaactctactcggccggtgacatcctctattaacacttcgactttcacc
ttatcaaacgctagccttcctgtaggtcagtcggctattgctctggaccgtgggactcct
accattgctttgcatagactcccgaatcacattgtggcgagtatagcccagaacggcaac
gggaccagtgtttcggccttggtccagcagggcgctcgcataggacccgtcacctctcca
gcttcacaggagaaccacagcaaaacggtcacagacactggggcttccaaaacagacgat
tgtcagtccaaaattgtaatgtcaagccagtctggtagtgtcaattctgtaataaacact
gtttcctctgcaccttctgttgtcacaccaacaacaacaactacagcagcagccacaaca
accacaacagtaactcagcctctgagctctgccacagtcgctgcttgtgtcacaggggtg
gctactagttctgtatgtggcactggtcagactacatcagtgaccaccactgttagcatg
gtcaggcccacagccccctctccaacacccgctgtggccacctccgcacagtcccaaccc
cgtcctggacttacagcacctcagaggatcgtagccccccagctgattgtcagaccacct
caacagcagaccaccattcagctgccccctgggtttaccatcccaccgggaatggtgttg
gtgcgtacagagctgggccagctggtgatggttcctcagcaggctttggctcaagctcag
gctcaagctcaggcccaggcccaggcccagaacaacatctctccacgacctgctaccccc
accacaggaacatccttcagagtaacaactccacagtctcctgtgacttctcagaccacc
aggcagtgccctttgaccccggccaagatggtaccatctccctctcccactccttccagc
cctgccctccagacctcctcctcttcctcttcttcttcctcctcctcctgtcctgcactt
cgcccaaagggccctgtggcgccggccgtggccgtgacggctccgcagcagacccccgtg
gttatggccccccaggccccggcccaggctgcctcccagccagcacagcctccgcagact
ggcatcgcagcggcccccggaggtcctgtcgtgtcccaggaaatgcaagagaatgtgaag
aagtgtaagaatttcttggccacactcatcaagctggcatctcacaattctccgtcccct
gagacttccaagaacgtcaaggctctggttcaggacctgctggatgccaagattgaaccg
gaagagttcaccagccggctgcagactgagctcaagtcgtctccacagccttacctggtg
ccctttctcaagaagagcctcccggccctgaggctttctttgctgaatagtcagcagtcc
ctgacccagcccccgcagcagggagtcaaaccagcacccggtggcatccctcctgccatt
gtggccgggccagctgtccgcatacgccaccctaacagcgtcagcaccactacgggtgcc
agtgcgctgcccgctgggacgctcggacatgcagctgccatgggtatcaagacagcgggt
gctgtcggtggccaggtgcggatgcctgtggtgatcacgcagtctgtcagagcgcaaggc
acaatggggaagggagccgtcatccaagcagggaaaagtcccgtgggcttggctgtacag
atctccgggaatcagaaaaacaagctcaacgaccccggaggaggctctttcagggatgat
gatgacatcaatgacgtggcctccatggccggggtgaacctgaacgaggagagcgcaaga
atacttgccaccaactcggagctagtgggaacgcagatccgctcatgcaaagacgaggcc
tttctccacccgggtctgctacaccgacgaattctggaaacagctaagaagtttggagtc
acagaggtccccatggaggcagtgacattcatctcgcacgccacacagtcacgacttcgt
actgtggtagaaaaggtttctactatcgcacagcaccgactggactcctgtaaggacgat
gagtgctacgagcagtctgcagacgttcgctctcagctccgcttcttcgaacagctggag
agaatcgagaagcagaggaaggacgagcaggagagagagatcctgttgaaagccgctaaa
agtcgctccaggcaagaggacccagagcaagcacgactaaaacagaaagctaaggagatg
cagcaacaggaactggcgcagatgaggcagcgagatgccaaccttacagcactagctgcc
attggaccccgcaaaaaacgcaaggtggattcaccaggggccaccccatcagggaccgag
gtttcaggcagcacggcaggctccccggccagctcctccgtcccgtccacctcatcgcgc
caatacacacggcaacgcatcactcgcgtcaacctcagggacttaattttctacatggag
caggagagagagaccgcccactccctcctcctttaccgtgccctgctcaagtag
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