Lates calcarifer (barramundi perch): 108876915
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Entry
108876915 CDS
T04895
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108876915
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108876915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HTH_Hrp3
DEAD
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
108876915
NCBI-ProteinID:
XP_018522240
UniProt:
A0AAJ7PFK4
LinkDB
All DBs
Position
LG2:complement(21846230..21917296)
Genome browser
AA seq
3028 aa
AA seq
DB search
MDFFDDPSLFVGGLDGLDEDGFPSAPSLVDELNLSADFEPLQVEPLGPGKHQDILPPVST
QQVMPTYNQQMGHYIGIKAQNPTGQAFPGPGGTGGGGSGMMPEQHGQYHNAAMSQVPQSN
GLFCNSSSPMWGNQDQNGNMYHPLSQQQQHQQQPLCHHPQQQQLHNQQLHVRQQQIQQQQ
HHSCHLQQQEQQHRKRQQQLQQQQSHQQQLLNQRQHQQINTQTMSLQQQQHHGFSFHQGS
QPQSQQQVHHSQQRVQHQLTVGGPRFQTRALPSKSYMDSQNASLSGTCLQQHQQRGSYQL
TRGGQAFPGSGPEDPNLPFPIHSSSMVHSLPACSVSSASAYQPAQYPAYPGEPEIPSLDQ
QSLSSASVSGPTTTTAPLSSTMPELSGTVCQFPPTGVMSQQHTRVPVSQAEECPFRALHC
SGATQGNSRSSEMFGESMSCYPSMTSQLPSEQPQSCGAINTNGFQALEDSLLTSEAQDGD
LEGLEPPDLLPDLLPQLEAALSQQDESNCSWADSSLGRGHDHRKQPPVEYKEGKPRKNAN
GPGSQVRVLSPPVKSSSSSSSSSSSSSSSSSSSSEKRTPRRTHHQMESTLQDKQEKANRI
ISEAIAKARQRGEKNIPRVMSPESFPSSSSQYKTHRDREHKGNGKARPKEKVSRKACIVP
SSKPKQKAKIGKIVIKIGKKKKRKPESSEEELDDDPPPRHTSKDDDSKRRSNRQVKRKKY
AEELEARLSDEEVKVIVKAKKTNTAASKEPALQLFVENPSEEDAAVVDKIMSSRIVKKEV
SPGVVVEVEEFFVKYKNYSYLHCEWATEQQLEKDKRIQQKIKRFKMKQAQRALFFADMEE
EPFNPDYVEVDRVLEVSYCEDKDTGEEVVYYLVKWCSLPYEDSTWELKDDVDQSKIEEFE
QLQAAKPDSRRVERPPANLWKKREQSREYRNGNSLRDYQLEGVNWLLFNWYNRRNCILAD
EMGLGKTIQSITFLEEIHRVGIKGPFLIIAPLSTIANWEREFHTWTHLNVIVYHGSMVSR
QMLQQYEMYFRDAQGRVIRGAYRFQAVITTFEMILGGCPELNAIEWRCVIIDEAHRLKNK
NCKLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLHFLEPARFPSENTFMQEFGDLKTEE
QVQKLQGILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGA
GQSNMPNLVNTMMELRKCCNHPYLIKGAEEKILEDFREVYSPTAIDFHLQAMVQSAGKLV
LIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS
KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYR
LITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSLGGGAGGGAVQQQLSKKEIEDLLRR
GAYGAIMDEEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDIALD
DPNFWDKWAKKADIDMDMVNGRNSLVIDTPRVRKQTRPFSATKDELAELSEGESDSDDTK
PKLRRNHDRLNSYGRTECFRVEKNLLVYGWGRWKDILNHGRFKKQLTERDVESICRALLA
YCLVHYRGDDKIKSFMWDLIAPTEDGRTKELQNHLGLSAPVPRGRKGKKMKTQSSSFDIH
KAEWLRKHNPEHMLQDDGYKKHLKHHCNKVLLRVRMLYYLKQEVIGNQAQKVLDGVDSSE
IKIWVPEPDHSELPALWWDAISDKCLLLGVYKHGYEKYNTIRADPTLCFLDRVGRPDEKA
IAAEQRGNDFMDGDVDDPEYKPAPALLKDDMEDDASSPGDLVVTDNAGDAAPVTEGESAY
WPSSSVLTARLRRLITASQRYTKSRQILHIHQTQSQSQQTMILSAPLCPLPPTLNDTLNP
KMAAKIERQQRWTRREEADFYRVVSTFGVVFDPNLGRFDWTKFRAMARLHKKTDESLQKY
LCAFTAMCRRVCRLPPKEGDSAVDPSLTIQPITEERASRTLYRVELLRQVREQVLRHSLL
YERLSLCQMSSDLPVWWEAGTHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQT
KAAQQQSRTSTPLLHPQHQATSSVLTGSPLPPAAQRDAEPCGVVPKVEPASEGEEGREKR
GESWSPPRAPATPTGLEEKPVSEMRDNERQMVAARTKPLTPNSSERKPKKASKRGRREAR
RGSESNSDGSSSSSSSRSSSSSSSSSSSSSHSGSSSSSSSSSCSSGSSSSSSSSSSSSDD
SESEGEERKKKVPAAVSVKGFDEDSVASLSTTQDETQDTHVAENGVTNNSSHPFQGGGYM
LAASYWPKDRVIINRLDSICQAVLKGKWPGTRRVYEPGGAVASFYTTKLLDNANSLCEDP
SASPQGSKVTKHVAENKEFSVKLNDQEGGLKLTFQKQGLPLKRPLESEEGPQAQQQYLAR
LHELQSASDTGLADITKPQCSFQTVPPGLTGQMRLNGVLEGQPVVKKRRGRRKNVEGMDL
LFMNRNRVPAVPDQVPPGWGGIGQVGAAMASTPGYSQSSSQVPGDTESRVPVINLKDGTR
LAGDDAPRKKDLEQWLKEHPGFVADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKI
DVNSLTGEERVQIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLP
ESMFDRILTGPIVPEEVSRRGRRPKNPLAKAAAAAAAAAAAPNAAASALGLNPLLANGLL
SGMDLTSLQAFQQNLQSLQSLQLTAGLMGLPSDASNLAASNLAAMFPMMLSGMAGLPNLL
SMSSLLGKPAQEGAGGSEEKTKGTTSGATGEPSASKAPSHTSDTKGERTEGSNTTPSSTS
SSTSSTTAPQSASAASAASSHPLSLNPLLLSSMLYPGMLLTPGLNLPVSATQPQSSNSDP
TPPSAPPPPAAAKSSPQETERPAEEKDGEEDDEALEEALDEEEEEEEEESAEQKENSGPE
GSGKAESSSSESGSSSSSSDDSDSSDED
NT seq
9087 nt
NT seq
+upstream
nt +downstream
nt
atggacttctttgatgatcccagcctctttgttggaggtttggatggactggatgaggat
ggctttccctcagcaccatcacttgtggatgagctaaacctcagtgcggactttgagccc
ctccaagtggaacctctaggcccagggaagcaccaagacatattgcccccagtttctact
caacaagtaatgcccacttacaatcagcagatgggtcactacattggtattaaggcacag
aatcctacagggcaggcatttcctggtcctgggggcacaggtggtggaggcagtggcatg
atgccagagcaacatggtcagtaccacaatgctgccatgagccaagtacctcaatccaat
gggctgttctgcaacagtagtagtccaatgtggggtaaccaagaccagaatgggaacatg
taccaccctttatctcaacagcagcaacatcagcaacaaccgctttgtcatcatcctcag
cagcagcaactgcacaaccagcaacttcatgtcagacaacaacaaatacaacagcaacaa
caccactcctgtcatcttcaacaacaggagcagcagcacagaaagcggcagcagcagctg
caacaacagcaaagtcatcagcaacagctgttaaaccagcgccagcatcaacaaattaac
acacagactatgtccctgcagcaacagcagcatcatggtttctcctttcaccagggaagt
cagcctcagagccaacagcaagttcaccatagtcagcagcgggttcagcaccaactaact
gtaggaggaccaaggttccaaacgagggctctgccaagtaagtcttacatggatagtcag
aatgcttctctgagcggaacctgcttgcagcaacatcaacagcgtggtagctaccagctg
accaggggaggccaagccttccctggatcagggcctgaggaccctaacctgcccttcccc
atacattcatcttctatggttcactccctgccagcgtgctccgtcagttctgccagtgca
taccaaccagctcagtaccctgcttaccctggagagccagaaatacccagtctcgatcag
cagtctttgtcctcagcctcagtttctgggcccaccaccaccactgcacctctctcttcc
acaatgcctgagctctcagggacagtatgtcagtttccacccacaggagttatgagtcag
cagcacactagggtcccagttagccaggcagaagaatgtcctttccgggccctacattgc
tctggagcaacccagggaaactccaggtcatctgagatgtttggtgaatctatgagttgc
taccccagtatgaccagccagctgccctctgagcagcctcagagctgcggggccatcaac
actaatggattccaggctttggaagatagtctcctgacatcagaggctcaggatggagac
ttggagggactggagcctcctgacctcctgcctgacctactgccccagctggaggctgct
ctcagccaacaggatgaatccaactgttcctgggccgattccagcctggggagaggacat
gaccacaggaaacaaccacctgttgagtacaaggaagggaagccccgaaagaacgctaat
ggtcctggtagccaggtacgggtcctcagtcccccagtgaagagcagctcatcgtcctcc
tcctcttcctcatcttcttcgtcctcatccagctcctcatcggagaagaggacgccacgg
aggacacaccatcagatggagtcaactctgcaggacaagcaggagaaggccaataggata
atatcagaagctattgcaaaggcccggcagcgtggagagaagaacatccccagagttatg
agccccgagagcttccccagctcttcctcacagtacaagacccaccgtgaccgcgagcac
aaaggaaacggcaaggcacggcccaaagagaaggtttctaggaaggcctgcattgtaccc
tcctccaagcccaagcagaaggccaagattgggaaaattgtcatcaagattggaaagaag
aaaaagcgaaagccagagtcttcagaggaagagttggatgatgaccctccccctcgacat
acttctaaagatgacgactctaagaggagatctaatcggcaggtgaagagaaagaaatat
gctgaggagctggaggccaggttgtcagatgaggaggtcaaggttattgtcaaagccaag
aaaaccaacactgcagcatccaaggagcctgctcttcaactctttgtagagaatcccagt
gaagaggatgctgctgttgttgacaaaatcatgtcttctcgaatcgttaagaaggaggtc
tctccaggagtggtggtcgaagtggaagagttttttgtgaaatacaaaaactactcctac
ctacactgtgagtgggccacagagcaacagctggagaaggacaagaggattcagcagaag
atcaaacgcttcaagatgaaacaagcacagagggcactcttctttgcagatatggaagag
gagccctttaaccctgactatgtagaggtagacagagtgctggaagtgtcgtattgtgag
gacaaagacacaggagaggaggtggtgtactacctggtgaagtggtgctcgctgccttac
gaggatagcacctgggagctgaaggacgacgtagatcagagcaaaattgaagagtttgag
cagctgcaggcagccaagccagactcgcgcagggtggagcggcccccagccaatctgtgg
aagaagagggagcagtcgagggaatacaggaatggcaacagcctcagggattaccagcta
gagggggtcaactggctcctcttcaactggtacaacagacggaactgcatcctggcagac
gagatgggcctcggaaagactatccagtccatcacattcctagaggagatccaccgtgtg
ggcatcaaggggccattcctcattattgctccgctctccactattgccaactgggagcgt
gagttccatacttggacccacctcaacgtaatcgtctaccatggaagcatggtcagcagg
cagatgctccagcagtatgagatgtatttcagggatgcacagggccgtgtgatacgaggt
gcctacaggttccaggctgttatcaccacgtttgaaatgatcctgggaggctgtcctgaa
ctcaacgccatagaatggcgctgtgttatcattgatgaggcccaccgcctcaagaacaag
aactgcaagctgctggagggcttcaagctcatgagcctggagcacaaggtcctgctgaca
ggtactcctctccagaacacagtggaggagctcttcagcctgcttcacttcctggagccg
gcacgcttcccctcagaaaacaccttcatgcaggagtttggagacctaaagactgaggag
caggtgcagaagcttcagggtatcctgaagcccatgatgctgcgtcggttgaaggaggat
gtggagaagaagttggctcctaaagaagaaaccatcattgaggttgagctcaccaatatt
cagaagaaatattaccgcgccatcctagagaaaaacttctctttcctggctaaaggagct
ggccagtcaaatatgcccaatctggtcaacaccatgatggagctgagaaagtgctgcaac
cacccctacctcatcaaaggggcagaagagaagatccttgaggacttcagggaagtatat
agccccactgccatcgactttcacctgcaggccatggtgcagtctgccgggaaactggtc
cttattgacaaactgttgcccaagatgaaggccggagggcacaaggtgctcatcttctcc
caaatggtgcgctgccttgacatcttggaagactacctcattcagagaaggtacttgtat
gagaggatagatggccgtgttcgtgggaacctgcggcaggccgccatcgaccgcttcagt
aagcccgactcggaccgcttcgttttcctcctgtgcacaagagctggtggcctgggaatc
aacctcacagcagcagacacctgcattatctttgactctgactggaacccacagaacgac
ctgcaggcccaggctcgctgccatcggatcggtcagaacaaggcagtgaaggtgtaccgt
ctgatcaccaggaactcgtacgagcgggaaatgtttgatcgcgccagtctcaagctgggc
ctggacaaagcggtactgcagagcatgagtggccgagataacagcctgggaggaggcgcc
gggggaggggcggtgcagcagcagctgtcgaagaaggagattgaggatctgttgagacgt
ggtgcttacggggccatcatggatgaggaggatgaaggggccaaattctgtgaggaggac
attgaccagatcctccaacgcaggacaaagaccatcaccattgagtctgagggacgaggt
tccacctttgctaaggccagttttgtggcgtctggaaaccgcacagacattgctctggat
gaccccaacttctgggacaagtgggccaaaaaggctgacattgatatggatatggtcaat
ggcagaaatagtttggtgatcgacactcctcgtgtcagaaaacagacaaggccgttcagc
gccaccaaggatgagctggcagagctttcggagggtgaaagcgacagtgacgacaccaaa
cctaagctcaggcgaaaccacgaccgcctcaacagctacggacgcacagagtgcttcaga
gtggagaagaacctgcttgtctatgggtggggtcgatggaaggatattctcaaccatggg
cgttttaagaagcagcttacagagagggatgtagagtcaatctgcagggccctgctggcc
tactgcctggtccattaccgtggagatgacaaaatcaaaagcttcatgtgggacctgatt
gcccctactgaggacggacgcaccaaagagctgcagaatcacctgggtttgtctgcccca
gtccctcggggcagaaaggggaagaagatgaagacacagtccagctcttttgatatccac
aaagctgagtggctcaggaaacacaacccagagcacatgcttcaggacgacggctacaag
aaacacctcaaacaccactgcaacaaggtgctgctcagggtcagaatgctctactacctg
aaacaagaggtgataggaaaccaggcccagaaagtgctagacggcgtggactccagtgag
ataaagatttgggtgccagagccagaccattcagagctgccagccctttggtgggatgcc
atctccgacaagtgtctactgctgggtgtatataagcatggttatgagaagtacaacact
attcgtgcagaccctaccctgtgcttcctagaccgcgtgggacgaccggatgagaaggcc
attgccgctgaacagagaggcaatgattttatggatggggatgtggatgatccagaatac
aagcctgccccagccctgctgaaggacgatatggaggatgatgcctcttctcctggagac
ttggttgtcactgacaacgctggagatgcagctccagtgacagagggtgaatctgcctac
tggccttcctcctcggtgttgacagcaaggctcaggcgtctgatcacagcctcccagcgc
tacaccaagagccgtcagatcctccacatccaccagactcagtctcagtcccagcagacc
atgatactgtctgctccgctctgcccgctgccccccacactcaacgacaccctcaacccc
aagatggctgctaagattgaacgccaacaaagatggaccagacgagaagaagctgacttc
taccgggtggtctccactttcggtgttgtttttgacccaaatcttggccggttcgactgg
accaagttcagggccatggctcggctgcacaagaagactgacgagagcctacagaaatac
ctgtgtgctttcaccgctatgtgccgacgggtgtgtcgcctgccacccaaagagggagac
tctgcggtggacccgtctctcaccatccagcccatcacagaggagcgagcgtctcgtacc
ctgtacagagtagagctgcttcgccaagtgagggaacaagtccttcggcattcgttactc
tatgagcgcctgtcgctgtgccagatgagctctgacttgcccgtctggtgggaagctggt
acccatgaccgcgacctgctaataggtgctgctaagcacggcgtcagccgcacagattac
cacattctgagggaccctgagctcagcttcatggctgcccagcgcaactacagccaaaca
aaagcagcacagcagcaatcacgcacatccaccccgctcctacaccctcagcaccaggcc
accagctcagtgttgacaggctctccgttgcctccagcggcccagagagatgcagagcct
tgtggggttgtacccaaagtggaaccagcctcagaaggggaggagggcagggagaaacgg
ggcgagagctggagccctcctcgagcaccagctactcccacaggtctggaagagaagcct
gtttctgagatgagggacaatgagaggcagatggtggcagcacggaccaagcccctcaca
cccaactcctcagagaggaaacccaagaaggccagcaagaggggccgcagggaggccagg
cgtggctcagagtctaactcagatggctcgtcctcaagttcttcatcgcgctcctcctcc
tcttcgtcatcttcatcatcttcctcgtcacattccgggtccagctcctcctcctcttct
tcatcttgctcttctggctcttcttcgtcatcgtcctcctcttcatcttcttctgatgac
agcgaaagtgaaggagaggaaaggaagaagaaagtgcctgcagcagtgagtgtaaagggc
tttgatgaggacagtgtggcatctctgagcactacacaggatgaaacacaagacacccat
gtggctgagaatggcgtcaccaacaactcctcgcatcctttccagggaggaggatacatg
cttgctgcatcttactggccaaaggatcgtgtgattatcaaccgcctggacagcatctgc
caggcagtgctaaaaggcaagtggccaggaacacgtcgggtctacgagcctggaggcgca
gtggcctccttctacaccacaaaactgctggacaacgccaacagcctgtgcgaggacccc
tctgcctcgccacaggggtcaaaggtgaccaagcatgttgcagaaaacaaggagttctca
gtaaaactcaatgatcaggagggaggtctgaagttgaccttccagaaacagggtctacct
ctaaagaggcccctggagtctgaggagggcccccaagcccagcagcagtacctggcccgg
cttcatgagttgcagagcgcctcggacacaggcctggctgacatcaccaagcctcagtgc
agcttccagactgtgcctccaggtcttacgggccagatgaggctgaatggagtactggaa
ggccaaccagtggttaagaagcgaaggggaaggaggaagaacgtagaggggatggacctg
ctcttcatgaacaggaatagagtccctgctgttcctgatcaggtgcctccaggctggggc
ggtattggccaggtgggcgcggctatggcatctacaccgggttacagccagagctccagt
caggtccctggggacacagagagcagggtccccgtcatcaacctcaaagatggcacccgc
cttgctggggatgacgctcccaggaagaaagatctagaacagtggctcaaagagcacccg
ggctttgtagcagacacaggagcctttattcctggggttaataagatgcaaatgcagttc
cacttccaggatggccggcccaagcagaagaggcaccgctgtaggaaccccaacaagatt
gatgtcaacagcctgacaggagaggagagggtccaaatcatcaacaggagaaatgcacgc
aaggttggtggagcctttgctcctcctctgaaggatctgtgccggttccttcaggaaaac
ccagagtatggagtcccacctgaatgggcagatgtggtcaaacagtcgggttacctcccg
gagagcatgtttgatagaatcctgacaggacccattgttcctgaggaggtgagccggcgt
ggacgtcgccccaagaatcctctggccaaggcggcggctgcagcagcggccgcagcagca
gcacccaacgcagcagcctctgccctcggtctgaaccccctgctggccaacggcctcctt
tctggaatggacctgaccagcctgcaggccttccagcaaaacctccagagtttacagtcc
ctgcagctcaccgcaggcctgatggggctgccgtccgacgctagcaacctggccgcaagc
aacttggctgccatgtttcccatgatgctgtctggtatggctggattgccaaacctgctc
agcatgagcagcttgcttgggaagcctgctcaggagggtgcaggaggctcagaggaaaaa
acaaagggaaccaccagcggtgcaacaggagagccgtctgcctctaaagccccttctcac
acctcagacaccaaaggagaaaggacagagggctcgaacacgactccttcctcaacttct
agctccacttcctccaccaccgccccacaaagtgcttcagctgcctctgcagcctccagt
cacccactgtctcttaaccccttgttactctccagtatgctttacccagggatgcttctc
actccaggccttaaccttccagtgtctgctacacagccgcagagctcaaacagtgacccc
acccctccttccgctcctcctccgcctgcggccgccaagtcatcgccacaggagacagag
cggccagcggaagagaaggacggagaggaggacgacgaggcattagaagaggctttggac
gaagaagaggaagaagaggaggaggagtcggcagaacaaaaagagaacagtggtcctgaa
ggttcggggaaagctgagtcatcttcatcagagtctgggagctcgtcctcatcctcagac
gattcagactccagtgatgaggactga
DBGET
integrated database retrieval system
