Lates calcarifer (barramundi perch): 108876927
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Entry
108876927 CDS
T04895
Name
(RefSeq) tropomyosin alpha-1 chain isoform X1
KO
K10373
tropomyosin 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04260
Cardiac muscle contraction
lcf04261
Adrenergic signaling in cardiomyocytes
lcf04814
Motor proteins
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108876927
04820 Cytoskeleton in muscle cells
108876927
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
108876927
04261 Adrenergic signaling in cardiomyocytes
108876927
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108876927
04147 Exosome [BR:
lcf04147
]
108876927
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Tropomyosins
108876927
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of microglial cells
108876927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tropomyosin
Laminin_II
CLZ
DUF745
Crescentin
TMF_DNA_bd
Lebercilin
DUF3450
PUMA_CC
ATG16
ERM_helical
Laminin_I
CENP-F_leu_zip
DUF16
SlyX
DUF1664
Motif
Other DBs
NCBI-GeneID:
108876927
NCBI-ProteinID:
XP_018522272
UniProt:
A0A4W6FPZ0
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Position
LG2:complement(24633604..24643423)
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AA seq
284 aa
AA seq
DB search
MDAIKKKMQMLKLDKENALDRAEQAESDKKAAEDRSKQLEDDLVALQKKLKATEDELDKY
SEALKDAQEKLELAEKKATDAEGDVASLNRRIQLVEEELDRAQERLATALTKLEEAEKAA
DESERGMKVIENRAMKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIESDLERTE
ERAELSESKCSELEEELKTVQNNLKSLEAQAEKYSQKEDKYEEEIKVLTDKLKEAETRAE
FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggatgccatcaagaagaagatgcagatgctcaagctcgacaaggagaacgccttggac
agagctgagcaggccgagtcagacaagaaggcagctgaggacaggagcaaacagcttgag
gatgacctggtagcactgcagaagaagctgaaggcaactgaggatgagttggacaagtac
tctgaagccctgaaggatgcccaggagaaactggagctcgctgagaagaaagccacagat
gctgagggtgatgtagcttccctgaacagacgtatccaactggttgaggaggagttggac
cgtgctcaggagcgtctggccacagctctgaccaagctggaggaggctgagaaggctgct
gatgagagtgaaagaggcatgaaggtcattgagaacagggcaatgaaggacgaggagaag
atggagctgcaggagatccagctgaaggaggccaaacacattgctgaggaggctgaccgc
aaatacgaggaggtggcccgtaagctggtgatcattgagagtgacctggaacgtacagag
gagcgtgctgagctgtctgagagcaaatgctctgagcttgaggaggagctgaaaaccgtg
cagaacaacctgaagtctctggaggctcaggcagagaagtactcacagaaggaggacaag
tacgaggaggagatcaaggttctcacagacaagctgaaggaggctgagacccgtgctgag
tttgctgagagatcagtcgccaagcttgagaagaccattgatgaccttgaggatgagctg
tatgcccagaaactgaagtacaaggccatcagcgaggagctggaccacgccctcaacgac
atgacctccatctaa
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