Lates calcarifer (barramundi perch): 108876958
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Entry
108876958 CDS
T04895
Symbol
myo5aa
Name
(RefSeq) unconventional myosin-Va isoform X1
KO
K10357
myosin V
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108876958 (myo5aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108876958 (myo5aa)
04131 Membrane trafficking [BR:
lcf04131
]
108876958 (myo5aa)
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108876958 (myo5aa)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108876958 (myo5aa)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
108876958 (myo5aa)
mRNA cycle factors
P-body specific factors
108876958 (myo5aa)
Membrane trafficking [BR:
lcf04131
]
Others
Actin-binding proteins
Myosins
108876958 (myo5aa)
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
108876958 (myo5aa)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
108876958 (myo5aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
DUF4407
TPR_MLP1_2
Myosin_N
DUF5382
AAA_16
nSTAND3
AAA_22
HTH_17
Motif
Other DBs
NCBI-GeneID:
108876958
NCBI-ProteinID:
XP_050933137
LinkDB
All DBs
Position
LG2:23941102..23993974
Genome browser
AA seq
1890 aa
AA seq
DB search
MAASELYTKCARVWIPDAEEVWKSAELTKDYKNGDASLLLMLEDGTNIEHKLDPKTKNLP
YLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYETLPIYG
TDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF
ATVSGSASEANVEEKVLASNPIMEAIGNAKTTRNDNSSRFGKYIEIGFDNRYRIIGANMR
TYLLEKSRVVFQADEERNYHIFYQLCASSHLPEFKTLKLSSANDFLYTRQGRSPVIDGVD
DTKELCTTRNAFTLLGINESYQMGLFQVLAAILHLGNVEIKDRDSDSSLIPPNNRHLTAF
CDLVGVTYQDMAQWLCHRKLKTATETYIKPLPRLQATNARDALSKHIYAKLFNWIVEHVN
KALITNVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKE
QIPWTLIDFYDNQPCINLIEAKMGILDLLDEECKMPKGTDDSWAQKLYNTHLKTCSLFEK
PRMSNRAFIIQHFADKVEYQCEGFLEKNKDTVNEEQINVLKASKFDLLVELFQDEEKATS
PTGQVPGTGGRTRLSIKPDKGRDKSSKEHKKTVGCQFRNSLQMLMETLNATTPHYVRCIK
PNDFKLAFSFDPKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLPD
KKLTCKNVLEKLVQDQDKYQFGKTKIFFRAGQVAYLEKLRADKLRAACIRIQKTIRCWLA
RKKYLRKRSAAITIQRFTRGYQARCLAKFMRRTQAATIIQKYQRMYVERKRYRQKQAAAL
AMQTILRAYMARQKYQALLREHKAVIIQKHIRGWLARCWYKRCLYSIVYLQCCIRRMRAR
RELKKLKIEARSVEHFKKLNKGMENKIMQLQRKIDEQNKENRSISERLIGLENSYSTESE
RMRSELSRLRGVEEDAKNKSNQVVSLQDELERLRKELSATQQEKKTIEDWAQTYRDEMEK
MVSELKDQNGMLKTEKDDLNRLIQEQSQQMTEKMARAIAEETQQLETDLNEERSRYQNLL
TEHLRLEEKYDDLKEEMALSSNVSKPGHRRTDSTHSSNESEYTYNSEYAELEEGSRAAED
VTRGIDTSLTLKLQKRLTELEQEKQSLRNELENKEEQFQRARARDDAEFKKARGAELEYE
SLKRQELESENKKLKHDLAEMRQSLLGDAATGAGAPGSPAYKVLLDQLNASCEELEVRKE
EVLILRSQLVSQKEAMHHKETMTEPSVFVEDVSKLKDADELKQAYIGLKDTNRSPRFMRK
PLEVNDLLSRLRSAAPDFHKLNEDGELWLVNQGLKETIRLLEHQLQTQRRSYDNEVEALR
GELQNVKEENNRQQQLLAQNLQLPPEARIEASLQHEITRLTNENLELMAEDPTASREARV
IILRRMVDLMEQLEKQDRTIRKLKKQLKVYSKRIGEMGAGQTEGQTSPGQMVDEPIHPVN
IPRREKDFQGMLEYKKEDELKLVKNLILELKPRGVAVNLIPGLPAYILFMCLRHADYVND
DQKVRTLLTSTINSIKKILKKRGDDFETVSFWLANTCRFLHCLKQYSGDEAFMKHNTSRQ
NEHSLSNFDLAEYRQVISDLAIQIYQQLIKCMENILQPMIVSGMLEHETIQGVSGVKPTG
LRKRTSSIADEGTYTLDSILRQLSAFHSTMCQHGTDPELIKQVVKQQFYIIGAVTLNNLL
LRKDMCSWSKGMQIRYNVSQLEEWLRDKGLMTCGAKETLEPLIQAAQLLQVKKKTDEDAE
AICSMCQALTTAQIVKVLNLYTPVNEFEERVSVAFIRTIQTRLRDRCESPQLLMDTKMIY
PVTFPFNPSSLALETIQIPSSLNLGFLTRV
NT seq
5673 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtcggagctgtacacaaagtgtgctcgggtgtggatccccgatgccgaggag
gtgtggaagtctgctgagctcaccaaggactacaaaaatggcgacgcctccctgctgctc
atgctcgaggatggaacgaacattgagcacaagctggaccccaagacgaagaacctgcct
tacctgcgaaaccctgacatcctggtgggcgagaatgacctcacagcgctcagctacctc
catgagccggccgtgctgcacaacctcaaagtccgcttcatcgactccaagctcatatac
acttactgtggaatcgtcctggtggccatcaatccgtatgagacgctgccaatctatgga
accgacatcatcaatgcctacagcggtcagaacatgggagacatggacccacacattttt
gctgtggcagaggaggcttacaagcagatggccagggatgagaggaaccagtcaatcatt
gtaagtggggagtccggagcaggaaagacagtatcagccaaatacgccatgagatacttt
gccacggtcagcggctctgccagcgaggccaacgtagaggagaaagtcttggcttccaac
cccatcatggaggccattggaaatgcaaagaccaccagaaatgacaacagcagtcgtttt
ggcaaatacatcgagatcggcttcgacaaccgctaccgcatcattggtgccaacatgaga
acatatctgctggagaaatcacgagtggtctttcaggcggatgaggagaggaattatcat
atcttctatcagctctgtgcatcatcccatctgcctgagttcaagactctgaaactgagt
agtgcaaacgacttcctgtacacgaggcagggccgcagccccgttatcgacggtgtggac
gacaccaaggagctgtgcaccactcgcaatgccttcacattgctcggtatcaatgagtcc
tatcagatggggttgttccaggtcttggctgctattcttcatctgggaaacgtggaaata
aaggacagagattcagacagcagtctcattcctcccaacaatcgccacctgacggcgttc
tgcgacctggtgggcgtgacctaccaggacatggctcagtggctgtgccacaggaagctg
aagacggccacagagacgtatatcaagcccctccctcgtctccaggctaccaacgcccgt
gacgcgctgtccaaacatatctacgccaaactcttcaactggatcgtggagcatgtcaac
aaggctctgatcaccaacgtcaaacagcattctttcatcggggtcctcgacatttatggg
tttgagacatttgagatcaacagctttgagcagttctgtatcaactatgccaacgagaaa
ctgcagcaacaattcaacatgcacgtgttcaaactggagcaggaggagtacatgaaggag
cagatcccctggactctgattgacttctacgacaatcagccctgcattaacctcatagaa
gccaagatgggaatcctggacctgttggacgaggagtgcaaaatgcctaaaggtacagat
gattcttgggctcagaaactgtacaacacccacctgaagacctgctccctctttgagaag
ccacgcatgtccaaccgcgccttcatcatccagcattttgctgacaaggtcgagtaccag
tgtgaaggtttcctggagaagaacaaggacactgtgaatgaagaacagatcaatgtgctg
aaggctagcaagtttgacctgctggtggagctgttccaggacgaagagaaggcaaccagt
cccactggtcaggtccccgggacgggaggccggactcgcctcagcatcaaacctgacaag
ggccgggacaaaagcagcaaagagcacaagaagaccgtcggctgccagtttcgtaactct
ctgcaaatgctgatggagactttgaatgcaaccactccacactatgtccgctgcatcaaa
cccaacgacttcaagttggccttctcgtttgatcctaaacgtgcagtgcagcagctcaga
gcctgtggtgtcctggagacaatccgcatctctgctgcaggtttcccatccaggtggacg
tatcaggagttcttcagccgttacagagtgctgatgaagcagaaggatgtgctccctgac
aagaagttgacctgtaaaaatgttttggagaaactagtacaggaccaagataaataccaa
tttggtaagaccaagatcttcttcagggccggccaggtcgcctatctggagaagctgcgt
gcggacaagttgcgcgctgcctgcatccgcatccagaaaaccatccgttgctggctggca
cgcaagaagtatctgcgcaagcgcagcgctgccatcaccatccagaggttcaccagagga
taccaggcccgctgcctggccaagttcatgcgtcgcactcaggcggccaccatcatccag
aagtaccagaggatgtacgtggagaggaaacgctacaggcagaagcaggctgctgccctg
gccatgcagacaatcctcagagcttatatggcccggcagaagtaccaggcgctactgagg
gagcacaaggcagtgatcatccagaaacacattcgtggctggttggctcggtgctggtac
aagcgatgcctttactccatcgtctacctgcagtgctgcatccgcaggatgagggccagg
cgcgagttgaagaagctgaagatcgaggctcgctcagtggagcacttcaagaagctcaac
aaaggcatggagaacaagatcatgcagctgcagaggaagatcgacgagcagaacaaggag
aaccggtcaatcagcgagagactcatcggcctggagaattcctactccacagagagcgag
cgaatgcgcagcgagctgagccggctgcgtggggtggaggaggacgccaagaacaaaagc
aaccaggtggtgtcgctgcaggatgagctggagcggctcaggaaggagctgagtgccacg
cagcaggagaagaagaccatcgaggactgggcacagacatacagggacgagatggagaaa
atggtctcagagctgaaggatcagaatggcatgctgaagacggagaaggacgacttgaac
aggttgattcaggaacagagtcagcagatgacagagaaaatggcccgtgcgatagcagag
gagactcagcagctggagacagatctgaacgaggagcgctctcgctaccagaatctcctg
acagaacaccttcgcctcgaggagaaatacgacgacctgaaggaggagatggctctttcc
tcgaacgtctccaagcctggtcacaggagaacagattccacccacagcagcaacgaatca
gagtacacctacaactcagagtacgccgaattggaagaaggttcccgggccgccgaagat
gtgacacgaggaatagacacttcactaaccctcaagctgcagaaacgtcttacagaactg
gagcaagaaaagcaatcgctgcgcaacgagctggaaaacaaagaagaacagttccagcgg
gctagagccagggatgatgcagagtttaaaaaggctcgtggggcagagctggaatacgag
tccctcaagcgtcaggagctggagtctgagaacaagaagctgaaacatgacctggcagag
atgaggcaaagcctgctgggtgacgcagctacaggtgccggggccccgggctcccccgct
tacaaggtgctgctggatcagctcaatgcctcctgtgaggagctggaggtccgcaaggag
gaggtgctgatcctgcgctcccagctggtcagccagaaagaagccatgcaccacaaggag
accatgactgagccatctgtctttgttgaggatgtgtctaagctgaaggatgctgatgaa
ctcaaacaagcttacataggcctcaaagacaccaacagatctcctaggttcatgcgtaag
ccgctggaagtcaatgatctcctgagtaggctcagatctgccgctccagacttccataag
ctgaatgaggacggagagctgtggctggttaatcagggcttaaaggagaccatcaggttg
ctggagcaccagctgcagactcagcgaagaagttacgataatgaggtggaggcgttgcgc
ggcgagctgcagaatgtcaaggaggagaacaaccgtcagcagcagctattggcccaaaac
ctccagctgcctccagaggcccgaatcgaagccagtctgcaacacgagatcacccggctc
actaatgagaatctggaactcatggccgaggaccccacagcatccagagaggctcgagtc
atcattttacgacggatggttgatctcatggagcagcttgagaagcaggaccgaaccatc
cgcaagctcaagaaacagctgaaggtttactccaagaggatcggagagatgggagcgggt
caaaccgagggccagacgtctccgggacagatggtggacgagccaatccacccggtcaac
attccccgcagggagaaagacttccaaggaatgctggagtacaagaaggaggatgagctc
aaactggtgaagaacctcatcctagaactgaagcctcgtggtgtggccgtgaatctgatc
ccaggtctgccagcctacatcctgttcatgtgtctgagacatgctgactatgtcaatgat
gaccagaaggtccgcactctgctcacttcgaccatcaacagtattaagaagatattgaag
aaacgaggagacgactttgagacagtttccttctggttggccaacacctgccgcttcctg
cactgtctgaaacaatacagtggagatgaggccttcatgaagcacaacacatcgaggcaa
aatgaacacagtctgtccaactttgacctggcggagtacagacaggtgatcagtgacttg
gccatccagatctatcagcagctgatcaaatgcatggagaacatcctccagcccatgata
gtctctggcatgctcgaacatgagaccatccagggcgtttcgggggtgaagcccacgggt
ctccgtaagcggacgtccagcatcgccgacgagggcacctataccctggactccatcctg
cggcagctgagcgccttccactccaccatgtgtcagcacggcaccgaccccgagctcatc
aagcaggtggtgaagcagcagttctacatcatcggagctgtcaccctcaacaacctgctg
ctacgcaaggacatgtgctcctggagcaaaggcatgcagatcaggtacaatgtgagccag
ctggaggagtggctccgagacaaaggtctgatgacgtgcggagccaaggagactctggag
cctctgatccaggcagctcagctactgcaggtgaagaaaaagaccgatgaggatgccgag
gccatctgctccatgtgccaggccctcaccaccgctcagatcgtgaaggtcctgaatctc
tacactccagtcaacgagtttgaggagagagtgtcagttgcattcatacgaaccatacag
actcgcttacgagaccgttgtgagagccctcagttgttgatggacacgaagatgatatac
ccggtcaccttcccgttcaatccttcctccctcgctctggaaaccatccagatccccagc
tcgctcaacctgggcttcctcacccgcgtctaa
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integrated database retrieval system
