Lates calcarifer (barramundi perch): 108876991
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Entry
108876991 CDS
T04895
Name
(RefSeq) nucleolar RNA helicase 2 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcf03009
]
108876991
03036 Chromosome and associated proteins [BR:
lcf03036
]
108876991
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108876991
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
Helicases
108876991
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108876991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-GeneID:
108876991
NCBI-ProteinID:
XP_018522391
UniProt:
A0A4W6G370
LinkDB
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Position
LG2:26796415..26870009
Genome browser
AA seq
749 aa
AA seq
DB search
MPSKIIFDTEDQAMEEHVDTVAEAKTLKIKTKEGKKLKKKQLEEQEDPDCEPPAPKKKKK
KDKLAADQVNGHLDEATDMNGNSNGVETPKQKTKKNSEEGTEKKKKKQKKAIAEGETNGH
STPNSPVQTPSQSSEDSTSDSEKETEETPEQREGAFSNFRISQVTIDKLKARGVSYLFDI
QVKTFNPVYDGEDVIAQARTGTGKTFSFAIPLVEKLQRNSSEMTRGRAPKVLVLAPTREL
AIQVAKDFKDVSKRLAIACFYGGSSYNPQIDAIRNGIDILVGTPGRIKDHIQNHKLDLTK
LKHVVLDEVDQMLDMGFAEQVEEILASSYEKDSDSNPQTLLFSATCPPWVYDVAKKYMRP
GCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKEAN
ELSMNAFIKQSAQSLHGDIPQKQRELTLKGFRNGAFEVLVATNVAARGLDIPEVDLVVQC
SPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDII
KSSSKDAVRFLDSVPVTAIDYFRASAEKLIEERGAVDALAAALAHISGATSLEQRSLLNS
DAGYTTMQLVCSQEMHNLGYAWRTIKEQLGEQFENHIHRMTFLKGKTGVCFDVPADKVKE
IQENWKDGRRWQLTAATELPELEEKQFNNRGDRGFGSGNRGDRRGGFRGGRGRSFGGNGG
RGNGFRSGGGGFGNNRGGHKRSFSQAFDY
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaaaatcatctttgacaccgaagaccaagccatggaggaacatgtagacact
gtcgcggaggctaaaaccctgaagatcaagaccaaggagggcaagaagctgaagaagaag
cagttggaggagcaggaggacccagactgtgaacctccagcaccaaagaagaaaaagaaa
aaagacaagcttgcagcggaccaagtgaatggccacttagatgaggccacagacatgaat
ggcaacagtaatggtgttgaaacaccaaagcagaagactaagaaaaacagtgaagaaggc
acagagaaaaaaaagaagaaacaaaagaaagcaattgcagaaggagaaaccaatggacat
tccaccccaaacagcccagttcagacaccgtcacagtcaagtgaagactcaaccagtgac
agcgaaaaagaaacggaggagacaccagagcagagggagggagccttctccaacttcagg
atctcccaggtcaccattgataaactaaaagctcggggagtctcttacctgtttgacatt
caggtgaagacattcaatcctgtatatgatggagaagatgtaattgcccaagcccgaaca
ggaacgggaaagactttctcctttgccatccctttggtggagaagctccagaggaattca
tctgagatgaccagaggccgggctcccaaggtcctggtgttagctccaaccagagagtta
gctatccaggttgctaaggacttcaaagatgtctccaagaggctggctattgcctgtttc
tatggaggcagctcatacaacccacagattgatgctatccgaaatggtatcgatattctg
gttggaacccctggtcgcatcaaagaccacatccagaaccataaactcgacctcacaaaa
ctgaaacacgttgttctggatgaagtagaccaaatgttagacatggggtttgcagaacaa
gttgaagaaattttggcttcatcatacgagaaagacagtgactccaacccccagactctg
ctgttttctgccacctgccccccctgggtatatgatgtggctaagaaatacatgagaccg
ggatgcaaacatgttgacctgatcggcaagaaaacacagaaggctgcaacaactgttgaa
catctggccatagcatgccactggtcacagcgtgcagctgtgataggtgatgtgatccag
gtttacagcggcagccatggcaggaccatcgtgttctgtgagacaaagaaagaggccaat
gaactttccatgaatgcattcatcaaacagagtgcccagtccctccatggtgatattcct
cagaaacagagagagctgacgctgaagggcttcaggaatggagcctttgaggttcttgtt
gccactaatgttgcagcccgtggattagatatccccgaagttgacctggtggtccagtgc
tctccacccaaggatgtggagtcatacatccatcgttcgggacgtacaggcagagcaggc
aggacaggagtctgcatctgtttctaccagaggaaagaagaggaccagctgcgctacgta
gaaaacaaagcaggaatcacgttcagacgagttggcgttcccactgccaatgatatcatc
aagtcatcaagcaaagatgctgtcaggtttctggactctgttccagttacagccatcgac
tacttcagagcatcagctgagaagctgatcgaggagagaggagcagttgatgcactagct
gctgcgctggcccatatttctggagccacaagtctagagcagaggtcactgctcaactct
gatgctggttacaccacaatgcagttggtgtgttctcaggagatgcataatctgggttac
gcctggagaaccatcaaagaacagcttggagaacagtttgagaaccacattcacagaatg
accttcctcaaaggcaaaacaggagtttgttttgatgttccagctgacaaagtcaaggag
attcaggagaactggaaggatggtcgtcgttggcaactgactgcagcaacagagctccca
gagctggaggagaagcagttcaataaccgtggtgacagaggctttggcagcggtaaccgc
ggtgacagaagaggagggttcagaggtggaaggggacgcagctttgggggaaatggcggc
cgcggtaatgggttccggagcggtggtggtggctttggcaacaacagaggaggacataaa
cgcagcttcagtcaagcttttgattactga
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