Lates calcarifer (barramundi perch): 108877285
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Entry
108877285 CDS
T04895
Symbol
mbd3b
Name
(RefSeq) methyl-CpG-binding domain protein 3b isoform X1
KO
K11591
methyl-CpG-binding domain protein 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108877285 (mbd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108877285 (mbd3b)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
108877285 (mbd3b)
Chromatin remodeling factors
NuRD complex
108877285 (mbd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD_C
MBDa
MBD
DUF7028
Clr2_transil
Pardaxin
Motif
Other DBs
NCBI-GeneID:
108877285
NCBI-ProteinID:
XP_018522784
UniProt:
A0A4W6CKW7
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Position
LG17:complement(9565417..9573034)
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AA seq
274 aa
AA seq
DB search
MEKKRWDCTALPKGWKMEEVTRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNQMDLS
SFDFRTGKMLMSKLNKNRQRLRYDNNNQNKGKPDLNTSLPVRQTASIFKQPVTKVTNHPN
NKVKTDPQKAVDQPRQLFWEKKLSGLNAYDIAEELVKTMELPKGLQGVGPGCTDKTLLSA
IASALHTSAAPITGQLSAAVEKNPGVWLNTAQPLCKAFIVTDEDIRKQEELVYSVRKRLE
EALMADMLAHVEEAASEGEALKEEGNGSEDMESV
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaaaaggtgggattgcactgctctccccaagggctggaaaatggaagaagtg
accagaaagtcgggtttgtccgctggaaaaagcgatgtctattattttagtccgtctggg
aagaagtttcggagcaagcctcagctggcccgttaccttggtaaccagatggacctcagc
tcctttgattttcgcacgggaaagatgctgatgagcaaattgaacaagaaccgccagaga
ctgcgatatgataacaacaaccagaacaagggcaaacctgacttgaacacatcactccca
gtcagacagacggcctctatttttaagcagcccgttaccaaggtgaccaatcatcccaac
aacaaagtgaagacggatcctcagaaagccgttgaccagcccagacagcttttctgggag
aagaaactcagtggtcttaatgcttatgacattgcagaggagctggtgaaaacaatggaa
ctccctaaaggcctacaaggcgttggtccaggctgcacagacaagaccctcttgtcggct
attgcgagcgctctccacaccagcgccgctccaatcacgggccagctgtctgcagctgtg
gagaagaacccgggcgtgtggctcaacacggcacagcctctgtgcaaggcttttatagtc
accgatgaggacatcaggaaacaggaggagctggtgtacagtgtgaggaaaaggctggag
gaggcactgatggctgatatgttggcccatgtggaggaggctgccagtgaaggggaggct
cttaaggaggagggcaacggcagtgaagacatggagagcgtatag
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