Lates calcarifer (barramundi perch): 108877382
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Entry
108877382 CDS
T04895
Symbol
lingo3a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108877382 (lingo3a)
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
108877382 (lingo3a)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_1
ig
Ig_2
LRRNT
V-set
Cupin_1
LRR_6
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
108877382
NCBI-ProteinID:
XP_018522916
UniProt:
A0A4W6FRI9
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Position
LG17:complement(9808059..9842491)
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AA seq
610 aa
AA seq
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MGVSLGPDVGWLLPFLFLLLMIMLSPAQSQGCPQRCECIPKLKTVSCYGKRLSALPDGIP
LDTKILDLSGNKLRWVEHGDLLPYPRLEKLDLSENMISVLEPNAFSSLQNLQLLSLRGNQ
LKLVPMGAFSRLSNLTSLDLSGNKIVILLDFTFQDLKSLKNLEVGDNDLVYISNKAFLGL
VGLRELTIERCNLTSVSSQSLSYLHNLVTLRLRYLSISALEDQNFRKLGNLRGLEIDHWP
FLEYISPHSLQGLNLSWLSITHTNITSVPTSALRSLAHLTSLNLSYNPISVLESWALRDL
VRLKELHLVNTNLAVVQPYALGGLRQIRLLNFSTNNLVTLEEGAFQSVNTLETLRLDGNP
LACDCRLLWILQRRKTLNFDGASPVCMMPVEVQGRALNAFSDSALFDHFTCQKPKIRNRK
LQQISAREGQVVSFICRAEGEPTPVIFWISPQRRRITTKSSGRLTVLPEGTLEIRYAQVT
DSGTYICIASNAGGNDTYFATLTVSGLPLDAALMANRTYYAGDLNDTNLNDTRVFLKFTL
DLKTILISTAMGCIMFLGVVLFCFILLFVWSRGRGQHKNNFSVEYSFRKVDGPAASGGQG
GARKFNMKMI
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgagtctgggcccagatgtaggctggctcctgcctttcctgttcttgctactg
atgatcatgctgtcacctgctcagagccaaggatgtccccaacgttgtgagtgcattcca
aagctcaagactgtgtcctgttacggtaaacgcctgtctgctctgccagacggcatccca
ctggacaccaagatcctggatctaagtgggaataaacttcgctgggtcgagcatggtgac
ttgcttccatatccgcgtcttgaaaagctggacctgagtgagaacatgattagcgtcttg
gaaccaaatgctttttctagcctccagaacttgcagttgctttcactgaggggtaatcag
ttgaaactagtccccatgggggctttctcacgtctctccaacctaacttcactggacctc
agtgggaataagattgtgattcttttggactttactttccaagaccttaaaagtctaaaa
aacctggaagtcggagacaatgatctggtttatatctccaacaaggccttcctgggttta
gtggggctgagggagctgaccattgagagatgcaacctgacttctgtgtccagccaatct
ttgtcttacctgcataacctggtgactctgcggctccgctacctcagcatctctgcccta
gaggaccagaacttccggaagctgggaaacctgagggggctcgagatcgatcactggccc
tttttggagtacatttcccctcatagcctgcagggtcttaacttgtcatggctgtctatt
acgcacaccaacatcacctctgtgccgacctccgccctgcgcagtctggctcacctcacc
agcctcaacctctcctacaaccccatctctgtgttagagtcctgggcgctgcgggacctt
gttaggctgaaggagctgcatctggtcaacactaacttggcagtagtgcagccatatgcg
ttgggtggtctacggcaaatccgccttcttaacttctccactaacaacctggtgaccctg
gaggagggagcctttcaatctgtcaacactctggagacgctgcgtttggatggaaaccct
ctggcctgcgactgccgcttgctctggatccttcagcgcaggaagaccctcaattttgac
ggtgcctccccagtgtgtatgatgcctgttgaggtgcaagggcgggctcttaacgctttc
tctgactcagctctctttgaccacttcacttgccagaagcccaaaatccgcaacaggaaa
ctgcagcagatatctgcccgtgaggggcaggtcgtgtcattcatttgcagagcagagggt
gaaccaacgccagtgatattctggatctctcctcagcgccgccgcatcaccacaaagagc
agcggccgcttaactgttctaccagaaggcacactagaaatacgatatgcccaggtaaca
gatagtggaacttacatctgtatagccagcaatgctggtggaaatgacacctattttgcc
acacttacagttagtgggctgccgctagatgcagccctcatggccaaccgtacttactat
gctggggaccttaatgacacaaatctaaatgatactagagtcttcttgaagtttactctg
gacctcaagaccatcctcatatccacagctatgggctgcatcatgttcctgggtgtagtc
ctgttctgtttcattctgctgtttgtgtggagtcgagggcgagggcagcacaagaacaat
ttctcagtggaatattccttcagaaaagtggatggacccgctgccagcggaggacagggt
ggggcacgcaagttcaacatgaaaatgatttga
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