Lates calcarifer (barramundi perch): 108877415
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Entry
108877415 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid receptor RXR-gamma-B
KO
K08526
retinoid X receptor gamma
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03320
PPAR signaling pathway
lcf04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
108877415
03320 PPAR signaling pathway
108877415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108877415
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108877415
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
108877415
Nuclear receptors [BR:
lcf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
108877415
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Ortholog
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GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
108877415
NCBI-ProteinID:
XP_018522970
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All DBs
Position
LG17:11101598..11118649
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AA seq
465 aa
AA seq
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MWHPVASPATGGSPGREMDYGHYSTGPMSTAHTHPPPMGGMVGHPSVISTSRHLPSPMST
LGSPMNGLASPYPVITSSLGSPSVSLPSTPNMNFGPLSSPQMNSMNSVSSSEDIKPPPGL
QNLGNINYQCTSPGGMSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDN
KECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGENEVESTSSFNEDMPVDK
ILDAELAVEPKTETYSDGSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQ
VILLRAGWNELLIASFSHRSVQVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKM
KDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAK
LLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaccctgtggcatcacctgcaactggaggaagccctgggagagagatggattat
ggccactactctacagggccaatgagcacagcccacacccacccgccacccatggggggc
atggtgggccacccatcagtcatcagcacctccaggcacctgccgtcccctatgtccact
ttgggctcgccgatgaacggcctggcctcaccctaccccgtcattacatcatctctaggc
tcaccctctgtatcgctgccatccacacccaacatgaactttggaccactcagcagtcca
cagatgaattccatgaacagtgttagcagctcggaggacatcaagcctccaccgggccta
cagaacctaggaaacatcaactaccagtgtacgagccccgggggaatgtcaaagcacatc
tgcgccatttgtggggaccgctcctcaggaaagcactatggtgtgtacagctgtgaggga
tgcaaaggcttcttcaagaggaccgtccgcaaagatctcacgtacacatgtcgagacaac
aaggagtgcctgattgacaagcgccagcgaaatcgctgccaatactgtcgctaccagaag
tgcctggccatgggcatgaagagagaagcggtgcaggaggagaggcagcgtgggaaggag
cggggcgagaatgaagtagaatctaccagcagtttcaatgaggacatgcctgtggacaag
atcctggatgccgagctggctgtggagcccaaaacggagacgtacagtgacggcagcccc
ggaaactctaccaacgacccagtcaccaatatctgccaagcagcagacaagcagctcttc
accttggttgagtgggccaaaaggatcccgcacttctccgaactcccccttgacgatcag
gtcatcctactaagagcaggctggaatgagctgctcattgcctcattctcgcatcgctcg
gtccaggtaaaagatggcatcttgttggcgacaggcctccacgtgcacagaagcagcgcc
cacagtgctggagtgggctctatctttgatagagtcctgacagagttggtatctaaaatg
aaagatatgcagatggataagacagagcttggctgcctgagagccatcgtcctcttcaac
cctgatgcaaaaggtctttcgaacccaccagaggtcgaggggctgcgggaaaaagtctat
gcttcattggagtcatatacaaaacagaaatacccagatcagcctggcaggtttgccaaa
ctgctgctccgcctgcccgccctgcgctccatcggcctcaagtgcctggagcatctgttc
ttcttcaagctgatcggggatacgcctatcgacaccttcctgatggagatgcttgaggct
ccacatcagatcacatga
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