Lates calcarifer (barramundi perch): 108877448
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Entry
108877448 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108877448
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108877448
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108877448
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108877448
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
108877448
NCBI-ProteinID:
XP_018523006
UniProt:
A0AAJ7LGN8
LinkDB
All DBs
Position
LG17:18234670..18262410
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AA seq
2385 aa
AA seq
DB search
MAFFRQLLLLLWKNITYRRRNKIQLIIELLWPLFLFVILIAVRHSHPPYKQSQCHFPNKA
LPSAGTLPWIQGIICNINNPCFPSPTPGETPGQVGNFDNSILSRFFVDAQTVLSYSGNRS
FSGFQDLMESVRKLGERRGPWPTERIEDYLRANETFSSFLLTNSSLSPETVDQLMKARLN
LQVAVAGAEMQLKDLVCNVSMLGQFLTVDGGEAVMNDLQTQLCDLPTDVLREAERLFLSQ
LDFTKRERLMANAEDLRVISQAVTSVSQELAVLIDDFSSLSSFAEMTAALRLLSPENRTA
LPRESFRAFSRIMCGHPEVGGERIPSLNWYEDNDIKSFLGKNGTEDTDLDRHNNTTPFCK
SLIQGLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVKRVMKELNKTFEDLQILQELNEAW
LEVGPRIKNYMETSMEIQLLQDLLRRPEVAVLVNLRLEKTSWTASRIARFLSTPSPQAPR
NPEAPPTWLDLYNDISHTITTLAQVTECFSLNKLEGLETEGQLIERALELLEDRQLWAGV
VFLLPNSSSPELPPHVTYKIRMDIDDVTRTNKIKDRFWDPGPAADPFNDMRYIWGGFVYI
QDLVERAVSRVLTGVQQNTGIYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAMII
KGVVYEKEARLKETMRIMGLGTGTLWLSWFISSVVPFLVSAALLIALLKWGDILPYSNPS
VVLFFLLAFATATIMQCFLISTFFSKANLAAACGGLIYFSLYLPYVLCVAWRDHLNTTHR
VLASFLSPVAFGFGCEYFSQYEEQGVGIQWYNLRSSPVEGDSYSFTISITMLYVDAFIYA
VAAWYIEAVFPGEYGIPRPWYFIFQLNYWGGVPLEAGMPIPPAPTEQDEDQIESEPSNLI
LGVSIRNLVKIYKKGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTISVLTGLFPPTSGT
VYIKGMDIRHDMDIIRRTLGVCPQHNVLFDILTVEEHVWFYGCLKGLSEEEVKAELDTLL
DDVGLLHKRHEQTKNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLLLK
YRKDRTIILSTHYMDEAELLGDRIAIISQGKLCCCGSPLFLKSKLGSGYYLTVVKREGLD
TSTPSSTSICTSTSISTNKLPPLKDSESSMSEDTGLGSEESSSYLAALLSLAQHHIPGAR
LVEDSGREAVINLPQVAAKDSSLAVFLSEVDQRLPELGISSYGLSDSTLEEIFLRVAEET
GVDAESELQAESPLNQQPSAGQRAESQHTEEPETGRKRLRKQEPQETDLLSGDGRGGIPL
TGWWLTWQQLRALFVKRWLYARRSRRGFFAQIVLPAVFVLVALLFSLIVPPFGKYPALQL
QPWMYGEQYTFFSNDAPGNPAMENLLEALLDQPGFGTKCMETDGEDNSTNPQCEGERGGL
LMRPQVSYSTWQMFSRGNWSRDRPSPECQCSTEDVRRMLPDCPQGAGGLPPPQIKRLTGD
ILQNLTSYNISDYLVKTYSQILKKSLKTKKWVNEFRYGGFSLGGSATQTLSRDHHVQDSI
MAIRTRYRVPQNSSLNHLLNRLPDFLGGLNSQNNVKVWYNNKGWHAMVSFVNVMNNGLLR
ASLPPGPERRKHGITVYNHPLNLTKEQLTRNGHVSSSLMTTSVDVLVSICVIFAMSFVPA
SFVLFLIEERVSKAKHLQFVSGVKPILYWLANFTWDMLNYTVPATMVVLIFISFQQQSYV
SETNLPALVMLLLLYGWSITPLMYPASFVFTVPSTAYVVLTSINLFIGINGSIATFVLEL
FVDEHLNEVNRILKKVFLIFPHFCLGRGLIDMAKNQAMADAFQRLGTKQTLDPLQWDFVG
KNLFAMAAEGVVFFIFTILLQYKFFIHFRPWWAEPEIPSLGPEDEDVARERERVKSGKAQ
SDILTMIDLSKIYKAGRKPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTPITYG
EAFLNHYSVLTEMERVHQLMGYCPQFDAISDLLTGREHLELYARLRGVQEDSVAKVAQWG
VKKLGLTQYAEREAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCIL
SVTKEGRAVVLTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIILRLADT
NPDSCPISSYMTNAFPSIELKERHQNVLQYQLPSHSCCLARVFDALANNHEELGIIDFSV
SQTTLDQVFVNFAKEQTDDDCLTGVVVSNGSVQPTRINPPAMQRHPPVTPPQQSKAPQQH
AKSPDSKPKEGKSKKAKSNKGKSKEGKANGEKSSSTAMTRLPQSEEKDQETPRTSRRGSS
GSDSSSGGVQGESSKSSRSKHRGESSSKSPSALFIVGSNTQDSTL
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atggcattttttagacagcttctcctcctgctctggaagaacatcacgtatcgcaggagg
aacaagatccagctgatcattgagctcctgtggcccctcttcctcttcgtcatcctcatt
gccgttcgtcattcacaccctccttacaaacagagccaatgtcattttccaaacaaagcc
ttgccatcagcaggcaccttgccctggattcagggcattatctgcaacatcaacaacccc
tgcttccccagccccacaccaggggagacaccgggacaagttggcaactttgacaactcc
atactgtctcgtttcttcgtggacgcccagactgtcctgtcctacagtggaaaccggagc
ttctctggctttcaggacctgatggagagtgtccggaagctgggagagagacgtggaccc
tggccaactgaaagaatagaagattacctacgagccaatgagacattttccagcttcctc
ctgaccaacagcagcctgtcgcctgagactgtggaccagctgatgaaggctcgtcttaac
cttcaggttgctgtggctggagctgagatgcagctgaaggacttggtgtgtaatgtgagc
atgttaggacagtttctaacggtggatggaggagaagccgtcatgaatgatctccagact
cagctgtgcgacctgcccactgacgtcctgcgagaggccgagcgcctttttctctctcag
ctcgacttcaccaaaagagaacgtctgatggcaaatgctgaagatctcagggtcatcagt
caggccgtcacctcagtttcccaggagctggctgtcctcatagatgatttttcctccctc
tccagctttgcagagatgaccgcagctcttcgtcttctgtccccagagaatcgcacagcg
ctgcccagagagagcttccgagctttttcgaggatcatgtgcggtcaccctgaggttggc
ggcgaacgcatcccatcactcaactggtatgaagacaatgacatcaagtccttcttaggc
aaaaacggcactgaggacaccgacctggaccgtcacaacaacaccactccattttgtaaa
agtttgatccagggtctggagtccaaccctctgtctcgcatcgtgtggcgaggaatcaaa
cctctctttataggaaaactgctgtacacgccagacactcctgcagtaaaacgagtcatg
aaagagttgaacaaaacatttgaggacctgcaaatcctccaggaactgaatgaagcctgg
ttggaggtgggaccccgtattaagaactatatggagaccagcatggagattcagctgctg
caggatttgttgaggcggccagaggtcgctgtgctggtcaacctgcgtctggagaagaca
tcctggacggcctcgcggatcgctcgtttcctgtccacaccctcaccacaggcccctaga
aatcctgaagcgccacctacctggctggatctctacaacgacatcagccacaccatcacc
actctcgcacaagtcactgagtgtttctctcttaacaaactggaggggttggagactgag
ggtcagttgattgagagagcgttggagctgctggaggacaggcagctttgggcaggtgtg
gttttcctgctgcccaactcctcatctcctgagcttccaccccatgtcacctacaagatc
cgaatggacatcgatgatgtgactcggacaaacaagatcaaggacaggttttgggatcct
ggaccagcagctgacccatttaatgacatgcgctacatttggggcggctttgtatacatc
caggacctggtggagagagctgtgagccgagtcctgactggagttcaacagaacacaggc
atttacatccagcagatgccatacccctgctacgtggacgatgttttcctacgagtgcta
aaccgctccctgccactcttcatgactctggcctggatctactcagttgccatgatcatt
aaaggtgtggtgtacgagaaggaggcaaggctgaaggagaccatgaggattatgggtctg
ggaacaggaacgctatggctcagctggttcatcagcagtgttgttcctttcctggtctct
gcagctcttcttattgctctgctcaagtggggggacatcttgccatacagcaacccctct
gttgtccttttcttcctcctcgcgtttgccaccgccaccatcatgcagtgtttcctcatc
agcaccttcttttccaaagctaaccttgccgctgcctgtggggggctcatatactttagc
ctctacctgccctatgtactctgtgtcgcctggagagaccacctcaacaccacacacaga
gtccttgctagttttctctctcctgtggcatttgggtttggctgtgaatacttctctcaa
tacgaggagcaaggtgtgggcatccagtggtacaacctgcgctccagccctgtggaagga
gactcctacagcttcactatctctataaccatgctttacgtggacgccttcatctacgct
gttgcagcctggtacatcgaagcagtgttccctggtgaatatgggatccccaggccttgg
tattttatcttccagctcaactactggggtggagttcccctggaggcaggcatgccgatc
cccccggcacctacagagcaggatgaagatcaaattgagtcagaacccagtaacctgatc
ctgggcgtgagcatcagaaacctggtgaaaatctacaagaagggagccaaactggccgtc
aaccacctcaacctgaagttctacgaggggcagatcacctccttcctcggccacaatgga
gccggcaagaccaccaccatatctgtcctgacgggcctgttcccacccacctctgggact
gtgtacatcaaggggatggacattcgccacgacatggacatcatccgaaggacgctggga
gtttgtccgcaacacaatgtcctgtttgacatactgacagtggaggagcatgtgtggttt
tatgggtgtctgaagggtttgtctgaagaggaggtgaaagcagagctggacactctgctg
gacgatgtcggtctgcttcacaaacgacatgaacagaccaaaaacctctctggtggcatg
cagaggaagctgtctgtggctatcgcatttgttggaggatctaaggtggttgttctggat
gagcctacagctggagttgatccttactcccgcagagggatctgggatctgctgctcaaa
taccgcaaagatcggactatcatcttgtccactcactacatggacgaggcagagctgtta
ggtgaccggattgccatcatctcccaggggaagctctgctgctgcggctcaccactcttc
ctgaaatccaagctgggatctggttattacctcactgtggtgaagagggaggggctggac
accagcacacccagcagtaccagtatctgcaccagcaccagcatcagcaccaataagctg
cctcctctcaaggacagtgagtcatccatgagtgaggacaccgggctgggaagtgaggag
agcagctcatacctggcggcgttgctctccctggcacagcaccacatccctggtgcaagg
ctggtggaggactcagggcgcgaagcggtgatcaacctgccgcaggtagccgctaaggac
agcagcctggccgtctttctgtctgaagtggatcagaggctgcctgaactgggcatcagc
agctacggcctatcagacagcacgctggaggagatctttctgcgagtagcagaggaaact
ggcgtggatgctgaatctgagctgcaggctgaatctcccctcaaccagcagccatcagca
ggacagagagcagagagtcagcatactgaggaaccagagacaggaaggaaaaggcttcgt
aagcaagaacctcaggagacagatctgctgagtggagatggccgaggtgggatccccctg
accggctggtggctgacgtggcagcagctgagggctcttttcgttaaacgctggctctac
gctcggaggagccgcaggggcttctttgctcagattgttctgcctgctgtgttcgtcctg
gttgcccttctcttcagcctcattgtacctccgtttgggaagtacccggccctgcagctg
cagccctggatgtacggagaacagtacaccttcttcagtaatgacgcccctgggaaccca
gccatggagaacttactggaagctctgctggaccagccaggttttggtaccaagtgcatg
gagacagatggagaagacaacagcacgaaccctcagtgtgaaggtgagcggggtggcctt
ctcatgcggccacaggtttcctactccacctggcagatgttcagcagaggcaactggagc
agagacagaccatctcctgaatgtcagtgtagcacagaggacgtccgccggatgctcccc
gactgcccacagggtgctggtggactgccacctccgcagattaagaggctgactggagac
atcctccaaaatctgacaagttataacatttctgattacttggtgaaaacctattcccag
atcctcaagaaaagcctgaaaaccaagaagtgggtgaatgaattcagatatggaggcttc
tccctcgggggcagcgccactcagactttatctcgggaccatcacgtccaagactcgatc
atggcaatcaggactcgttacagagttccacagaacagttcactgaatcaccttcttaac
cgactgccagattttcttggaggactaaacagtcaaaacaatgtcaaggtgtggtacaat
aacaaaggctggcacgccatggtgtcatttgttaacgtgatgaacaatggtctgctgcga
gcgagcctaccaccaggtccagagaggaggaaacacgggatcactgtctacaaccaccca
ctcaacctcaccaaggaacaactcaccagaaatggccatgtgagttcttcactgatgacc
acatcagttgatgttctcgtttccatctgcgtgatctttgccatgtccttcgtgccggcc
agcttcgtcctatttctgatcgaggagcgagtcagtaaagccaaacaccttcagtttgtc
agcggggtcaaaccaatcctctactggctcgccaacttcacctgggacatgttgaactac
accgtcccagccacaatggtggtgctgatcttcatcagtttccagcagcagtcgtacgtt
tcagagacaaacctgcctgctctcgtcatgctgctcctcctctatgggtggtcgataacc
cctctcatgtacccagcgtcctttgtgttcaccgtcccaagcacagcttatgtggttctg
acttctatcaacctcttcattggaataaacggcagcatcgccaccttcgtcctggagctg
tttgtagacgagcatctgaacgaggtgaaccggatcctgaagaaggtcttcctcatcttc
cctcatttctgtctgggacgaggactcattgacatggccaaaaatcaggccatggctgac
gcctttcagagactgggcaccaaacagactctggatcctctccagtgggattttgttggg
aagaacttgtttgcgatggcagctgagggcgttgtcttcttcatcttcaccatactgctg
cagtacaagtttttcattcacttcaggccatggtgggctgagcctgagatcccttctctc
ggtccagaggacgaggacgttgccagggagagagagagggtcaaaagtggcaaagcccag
tcagacatcctcaccatgatagacctgagcaagatttataaagcaggcaggaagccagcg
gtggatcgtctctgcctggggatcccacgtggtgagtgtttcggcctgctgggagtgaac
ggagcaggaaagacctctacatttcgcatgctgactggagacactcccatcacatatgga
gaggctttcctgaaccactacagtgtgctgacagagatggagcgagtccaccagctgatg
ggttactgtccacagtttgacgccatcagcgacctgctgacaggtcgggaacacctggag
ctgtacgcccgtctgcggggggttcaagaagactctgtcgccaaggtggcgcagtggggg
gtgaagaaactgggcctgacacagtacgctgagcgggaggccggaggctacagcgggggc
aacaagaggaaactctccactgctatctctctcatcggggcgccgcctgttatattcctg
gatgagcccaccactggtatggatccaaaagccaaaagatttttgtggaactgcatcctc
agtgtcaccaaagagggaagagctgtagttctcacctcccacagtatggaggagtgtgag
gctctctgcaccaggatggccatcatggtcaatggcaggttccagtgtctgggatctgtg
caacacctgaagaacaggtttggcgacggctacaccatcatcctgcgtctggcggacact
aacccggactcctgtcccatcagcagctacatgacgaatgcttttcccagcatcgagctg
aaggagcgtcaccagaatgtgctgcagtaccagctgccctcacactcctgctgcctggct
cgtgtcttcgacgcgttggccaacaatcatgaggagctgggcatcatcgacttctctgtt
tcacagaccaccctggaccaggtgtttgtcaactttgccaaagagcagactgatgatgac
tgcctcacaggcgtggtcgtcagcaacgggtcagtacagcccaccaggattaaccctccc
gccatgcaacgacacccaccagtcacacccccccagcaaagcaaggctccacagcagcat
gcaaaatcacccgacagcaaacccaaagagggcaaatcaaaaaaggctaaatccaacaag
ggcaaatctaaagaaggcaaagctaacggagaaaaaagcagcagtacggcaatgaccaga
ttacctcagtcagaggagaaggaccaggagacgcctcggacgagccggaggggcagcagc
ggatcagacagcagcagcggtggagttcagggagaatccagtaaatccagtaggtccaaa
cacagaggagagagctccagtaaaagtccctctgcactttttatagtcggcagcaacaca
caggacagcacactgtga
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integrated database retrieval system
