Lates calcarifer (barramundi perch): 108877521
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Entry
108877521 CDS
T04895
Name
(RefSeq) AP-5 complex subunit beta-1
KO
K19022
AP-5 complex subunit beta-1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108877521
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
108877521
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Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_barrel
AP5B1_C
AP5B1_N
Motif
Other DBs
NCBI-GeneID:
108877521
NCBI-ProteinID:
XP_018523127
UniProt:
A0A4W6FI12
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All DBs
Position
LG12:complement(11283512..11288429)
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AA seq
953 aa
AA seq
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MAVNWADRISAFSLSPSRFLSGTTAEAFLAELLRELRDDKASFSVKVLLSSPLCEYPTLL
CPSDTVGEETALELMSVFAQCPPRYVQFRCHLLLDLTSVLVCTSCVSSCSRASQDFLDLL
LQISQDTSDLHCDGALHSLRATACDCLWELEACSPGLLSQHIELFSGLRQQQSSRFHQAY
AGLHTLVLRNAVYKLTQETGAGAGRLKALLGGNTSVAWEADQESGLTNKKNSTIPSFILG
PMGMVPTLQTGSDCKELRSVLSSLLEESYLLTPLCQAALLHRLTEVVAMVPGVPPAIFRA
QLLRLLGTSKVCLLHSTLLMKCAFTDSLFSAEDEAFILKRLVVLSQHPLLSTPEKLFYMD
CILHFPENRPISCGDSDETLPVLLTPQLASALVPTVFNDSATMLARLNLLSLVYLEEGEE
GEGEEGRGLAYLYEHLTALLHIVENGGSRETVVTFFRAAFLFLLNFYHIEHYSNSLIEKV
CKLYLHHTQLAPHIISLADQTQDRLSESNWAVQLLEALQRIITEAPLAQLTLKDLRWHLK
MLARVAEEGKIPQHSTLGFLSSVITPSSSSLCVSGDWRQGNSVLGVCRRLLVHPSLDSLI
IPLADILQHLTCCYGDTDVQDHARLYYTILTTLSREKLAGVLAQGTAEGGRQVTKRSLSS
IMAESEGLTSMLTIHQMEKAIFNVVEVISEPQEETHSDKECHPNQTETEMCPDEMNTALE
SYRGQFNDPDFASEITLGYQLVHAEAHDSRFDQLFSIRLHFNLTDDHYEELDDISVPCLV
RERPSPVVKLRLKPRRPYPTTLHASAIFTTQDGLSWHSILPDIHVAFQQDFMPVPAPPAW
GQGSKLNLFERLWDEFCSESGDCATSLFCCQLKETALISLVKKNFLPYLVSDSSSKEEFK
VLIFLPPQYHMLLKIGFKEDAVHFDIATDNWQLLPHISSYLLIITSSQEDTYS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaactgggccgacaggatctctgctttctctctcagtccgtctcgcttcctc
tccgggacaactgcagaggcttttctggcagaactgctccgtgagctccgagatgacaaa
gctagtttcagtgttaaggttctcctgtcatccccactatgtgagtacccaactctgctg
tgtccttcagacactgtgggtgaggagacagccctggagctcatgtcggtatttgcccag
tgtcctcccagatatgtgcagtttcgttgtcacctcctcctggacctcacctctgtgctt
gtctgcacttcctgtgtgagcagctgttcccgcgcgtctcaagatttcctggacctgctc
cttcagatatcccaggacaccagtgaccttcattgtgatggtgctcttcattctcttcgg
gccacagcttgtgactgcttgtgggagctggaagcttgctctcctggccttctctcccag
cacattgagctctttagtgggctcaggcaacaacaatcctccaggttccaccaggcctat
gcaggacttcatactctggtgctgaggaatgctgtgtataaactaacccaggaaacagga
gctggtgctgggagacttaaagctcttctgggagggaacacgtcagttgcatgggaagca
gaccaggagtcaggcctgacgaacaaaaaaaactcaaccataccgtctttcatcttggga
cccatgggtatggtgccgaccctccagactggatctgattgtaaggagctgcgttcagtc
ctgtcgtctctcctggaggagtcataccttctcactcctttgtgtcaggctgcactgctg
catagactgacagaggtggttgccatggtgcctggtgtccctccagccatattcagggct
cagctgctgcgactgctgggcacaagcaaggtttgtctcctccactccactctgctgatg
aagtgtgcattcacagacagcctgttcagtgcagaggatgaagccttcatcctcaaacga
ctggtcgtgctctcccagcacccactgctgagtacacctgagaagcttttctacatggac
tgtatcctgcactttcctgaaaaccgtccaatcagctgtggcgacagtgatgagactctc
cctgtgctgctgactccccagcttgcctcagctctagtgcccactgtgttcaatgacagt
gccaccatgctggccagactcaacctgctgtctctggtctacctggaggagggagaggaa
ggggagggggaggagggcagggggctggcctacctctacgaacacctcactgcgctgctg
cacattgtggagaatggaggcagcagagagactgttgtcacgttcttcagggctgccttc
ctcttccttttgaacttctaccacatagagcactactctaacagcctgattgagaaggtg
tgtaagctctacctccaccacacccagctagctccacacatcatcagcctggccgaccag
actcaagacagactatctgagtctaactgggctgtgcagcttctggaagccctgcagaga
atcatcaccgaggccccgctcgcccagctcaccttgaaagacctccgctggcacctcaag
atgctagcacgggtggcggaggaaggaaaaatcccccagcacagcaccctaggctttctg
tccagcgttatcactccatcatcctcctcactgtgtgtaagtggtgactggcgtcagggg
aacagcgtgttgggagtttgccgccgcttgcttgtacatcccagcttagactcactgatt
attcctctggctgacatcctgcagcatctcacctgctgctacggagacacagatgtacag
gaccatgcccgtctttactacaccatcctcactacactgtcccgggagaagctggctggg
gtgttggcgcagggtactgccgagggagggcggcaggtcacgaaacgatcgctgtcgtcc
atcatggccgagagtgaggggctgacaagcatgctaaccattcaccagatggagaaagca
atattcaatgtggttgaggtgatttctgagccacaagaagaaacacattcagataaagaa
tgtcacccaaaccagactgagacagagatgtgcccagatgagatgaacacagcactagaa
tcttacagaggtcagttcaatgaccctgattttgcctcagaaatcaccttaggctaccag
ttggttcatgctgaggctcatgactcccgctttgatcagctcttcagcatccgcctgcac
ttcaacctcacagatgaccattatgaagagctggatgacatcagtgtcccttgtctagtc
agagagaggccgtcgccagtggtgaagctgagactgaagcctcggcggccctaccccacc
accctccatgccagcgccatcttcaccacacaggatgggctctcctggcacagcatcctg
ccagacatccatgtggctttccagcaggacttcatgcctgtgcctgctcccccagcttgg
ggacaaggcagcaaactaaacctgtttgagagattatgggatgaattctgctcagagagt
ggggactgtgctactagcctgttctgctgccagctgaaggaaacagccctgatttccttg
gtgaagaaaaacttcctcccctaccttgtttcagactcatccagtaaggaagagtttaaa
gtgcttatcttcctcccaccacagtatcacatgctgctgaaaatcgggttcaaggaagat
gctgtacacttcgacattgccacagataactggcaacttttgcctcacataagttcgtat
ctactgataatcacatcttcacaggaggacacttacagctga
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