Lates calcarifer (barramundi perch): 108877563
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Entry
108877563 CDS
T04895
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108877563
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108877563
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108877563
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108877563
NCBI-ProteinID:
XP_018523155
UniProt:
A0AAJ7PG91
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Position
LG11:16842552..16850718
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AA seq
648 aa
AA seq
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MRGSYGDRDRDRGRDRGSPRFGSSRGGPPQGKKFGNPGDRLRKKRWDLDELPKFEKNFYS
EHPEVQRMSQYDIEEYRRKKEITVRGSGCPKPVTNFHQAQFPQYVMDVLMQQNFKEPTAI
QAQGFPLALSGRDMVGIAQTGSGKTLSYLLPAIVHINHQPYLERGDGPICLVLAPTRELA
QQVQQVAYDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQI
NVGALELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKKRCDDLTRR
MRRDGWPAMCIHGDKSQPERDWVLSEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTNKGTAYTFFTPGNLRQARELIRVLEEARQAINPKLLQLVDTGRG
GGGGGGRPRFRGGSNSNNPNLMYQDECDRRMRSVGGSGSSKDSRSGNYSRDSRDSRSGSS
RDGDRSSSSSSSYRDRSNRDGGRSYGSSSNSYDQYQNNNSSSGGGQYSTSRGTSGSGSGG
VVQAPPPSSVPQPLMAQQFNPPQPMMGLMGHSPFQFAPPPPPPPSGRK
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagaggttcgtatggagacagagaccgagaccgtggccgtgacagaggcagccctcgt
ttcgggtccagcagaggtggcccaccacagggtaaaaagtttgggaaccccggggaccgc
ttacgaaagaaaagatgggacctggatgagctgcctaaatttgagaagaacttctatagc
gaacaccctgaagtgcagcgaatgagccagtatgatattgaggagtatcgcaggaagaag
gaaatcacagttcgaggttcaggctgccccaagcctgtcaccaacttccatcaggcacag
tttccccaatatgtaatggacgtactgatgcagcagaacttcaaggagccgacagctatc
caggcacaaggtttccccctggccctcagtgggagagacatggtgggcatagctcagact
ggctctggcaagactttatcgtatctccttcctgcaattgtgcacatcaatcatcagccc
tacttggagcgtggagatggacccatttgcttggttctggccccaacaagagaactggcg
cagcaggtccagcaggtggcatacgactacggaaagtcatcccgcatcaaaagcacttgt
gtgtatgggggtgctcccaaaggaccacaaatccgagacctggagagaggtgttgagatc
tgcattgccacacccggtcgtttgattgacttccttgaggctggaaagaccaatctgcgg
cgctgcacatacctagttctagatgaagctgaccgcatgctggacatgggttttgaacca
cagattcgcaaaattgtggaccagattaggcctgacagacagactctgatgtggagcgct
acctggcctaaagaggttcgccagctggcagaagacttcctgaaggactatgtccaaatc
aatgttggagcattggaactcagcgccaaccacaacatccttcagatagttgatgtctgt
atggaaagtgagaaggatcacaagttgatccagttgatggaggagattatggctgagaaa
gagaacaagaccatcatctttgtggagaccaagaaacgatgtgacgacctcacacgcaga
atgagacgtgatgggtggccagcgatgtgtattcatggtgacaagagtcagccagagaga
gactgggtgttgtcagagttccgtagcggcaaagctcccatcctcatcgctactgacgtg
gcctcacgtggtttggatgtggaggatgtcaagtttgtcatcaattatgattaccccaac
tcatcagaggactacatccatcgcatcggccgtacggcccgcagcaccaacaaaggcacc
gcctacaccttcttcactccggggaacctccggcaggcccgcgagctgatccgggtgctg
gaggaggcccgacaggccatcaatcccaaactgctgcagctggttgacactggacgtgga
ggaggcggaggaggtggccgccctcgtttccgtggcggctccaattccaacaatcccaac
ctcatgtaccaggacgagtgtgatcggcgaatgcgttctgtgggcggcagcggcagctcc
aaggacagccgcagcggcaactacagtcgtgacagccgcgatagccgcagtggaagcagc
cgggatggggaccgctcctcctcctcttcctcctcatacagagatcgcagcaacagagac
ggagggcgcagctatggctccagctccaattcatacgaccagtaccagaataacaacagc
agcagtggcggtggccagtacagcacctccaggggcacctctggttcggggagcggtgga
gtggtgcaggccccacctccgtcgtcagttccccagcctctgatggcacagcagttcaac
cctccacagcccatgatgggcctgatggggcactcaccattccagtttgctcctccacca
ccgcctcctccctcagggagaaagtaa
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