Lates calcarifer (barramundi perch): 108877599
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Entry
108877599 CDS
T04895
Name
(RefSeq) AP-5 complex subunit zeta-1 isoform X1
KO
K19025
AP-5 complex subunit zeta-1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
108877599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108877599
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
108877599
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Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_AP5Z1_C
TPR_AP5Z1
SPG48
Motif
Other DBs
NCBI-GeneID:
108877599
NCBI-ProteinID:
XP_018523200
UniProt:
A0AAJ7LIN3
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Position
LG11:16245680..16253219
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AA seq
853 aa
AA seq
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MYSHGSESLIKQAREIQEPELQKFYSRLVKLLQGKEFGHETIDSLQRLHLILSATKYTRT
LPAELQKRLLSLLSSPAEQLQVLGSAVLRETLPLPGQELHCNQENMGPLNTHTAALLLSQ
AGSRADLSSLCAQLLRGLESRQSEGPAHSLAHTLPILNTILTHSPECLTEDHLTLLSKKL
VDWLRYASITQGGGASSGGFFTGPRSRQPVPIAELDGTVSGDFFTVLCVGQGFTEDQWMN
VYSFSMLRHWLLTYHSVSSGSTAADTANRLQLSLSLSHSHSFSNDFLCSAAFLGALPPPV
DQWNRVITLGGWSKTPQDDRSEVDGSVVSMVSATSSSSRLLPPKERLREKAFQYCLRLIE
QSDRKAHKRTDTELQKACLVEAVCILDCVCVEDASLVYRTFPCVKALFGRLSSDLTFARV
LLPIAQFYLNHGEMAAVDCESVWKLVFGQFPAELFNDPFLAHELLRFLRLNLESLQLRVP
QYTRSFPNLLKFLAWDSPAVVDDFVDLLPSLVTAETAVELFHTLLDLPCLSATLVLQLRS
TCSPISESGGRGLLSLDAFRSPSFRGLFLFLLRAEAGSGDTIDRLSTLHELLAEAVDWQR
VVQCAQTVPVLLHIFFNTVVTAADEKLLAHLILAMLERSSLLLNLPTYIKEIHRVFSCHL
LRLCKLHPSLVVDQSHELLEFAGTTANVYSKEEIYTHVVWVLGEYLSVSCDSRCSVRLIT
SCFEALEAVLFEITSSAPPPGAACPAPRVVTTLMSALAKLASRSHDLIPRVSLFLSKLRT
VTRGGSVAWCSDEEDLIAIVTRGEELWSLLKTPGVAQSVLTPPQHVTTPQWHRDTNVSMP
LQLRTLTSLTHSQ
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtactcacacggctcagaaagtttaattaaacaagcgagggagatacaggagcctgag
ctgcagaagttttacagcaggttagtgaagctgctccaagggaaggagttcggtcatgag
acgatcgactccctgcagagactgcacctcatcctctctgccaccaaatacaccaggacg
ttgcctgcggagctacaaaagaggcttttatctctcctctcgtcaccggcggagcagctt
caggtgctgggctcagctgtgctcagagagacactgcctctccctggtcaggaactgcac
tgcaaccaggagaacatgggtccgctcaacacccacactgctgccctgctgctctcacag
gctggatccagggctgatctgtcatctctatgtgctcaactccttcgaggcctggagagc
cgtcagtcagaagggccagctcattcgctcgcgcacacactgccgatcctcaacaccatc
ctcacacacagtcccgagtgcctcactgaagatcacctgaccctcctgagtaaaaagctt
gtcgattggctgcgttacgcaagcatcacgcagggaggcggagcttcttcaggaggattc
ttcacaggacccagatcacgtcagccggtgcctatagcagagctggatgggaccgtgtct
ggggatttcttcactgtgctgtgtgtgggccaaggcttcactgaggaccagtggatgaat
gtttactccttttccatgctgcgccactggcttctcacctaccactctgtttccagtggc
agcactgcagctgatactgcaaacaggctacagctcagcctctccctctcccactcccac
tccttttctaatgacttcctctgcagtgctgcatttctaggtgcattgccaccacctgta
gatcagtggaatcgtgtgattacattgggaggatggtcaaaaactccacaggatgaccgc
tcagaggtggacgggtcagtggtttctatggtttcagcaacttcctcctccagccgcttg
ctgcctccaaaggagcgtctgagggagaaggctttccagtactgcctacgcctcattgaa
cagagcgatcgcaaggcacacaaaaggacagatacagagctgcagaaagcgtgcctggtg
gaggcagtgtgtatcctggattgtgtgtgcgtagaggatgcctcacttgtctaccgaaca
ttcccgtgcgtcaaggcgctcttcggtcggctcagctcagacctgacatttgccagagtc
ctgctgcccatagcacagttctacctcaaccatggtgagatggcagcagtggactgtgag
agtgtgtggaagctggtgtttggccagttccctgctgagctgttcaacgaccccttcctg
gctcatgagcttctacgtttcctacgactgaacctcgagagcctgcagctccgagttcca
cagtatacccgctccttcccaaacctgctgaagttcttagcgtgggacagcccagcagtg
gtggatgattttgtggacctgctgccctctctggtgacggctgaaactgcagtggagctg
ttccacactctgctggacctgccctgtctctctgccacgctggtattacagctcaggtca
acatgctcgcccatctctgagtcaggtgggcgcggcctcctgtcactggatgcatttcga
agtccctctttcagaggccttttcctcttcctgcttcgagcagaagcaggatcaggtgac
acaatcgacagactgagcacgctccatgagctgctagctgaggcggttgattggcagaga
gttgttcagtgtgcccagacagtccctgtgctgttgcacatttttttcaacacagttgtt
acggccgctgacgagaagcttttagctcatttgattctggcgatgctggagagaagcagc
ctcctcctcaacctccctacatacatcaaagagatacacagggtgttcagctgccacctg
ctgaggctgtgcaagctccacccctctctggtagtggaccagtctcatgagctgctggag
ttcgctggaaccacagccaacgtctacagcaaagaagaaatctacacacatgtggtgtgg
gtgctgggagagtacctctctgtgtcatgtgactctcgctgctctgtgaggctcatcact
tcctgttttgaggcgttggaggcagtgctatttgagattacgtcatccgccccaccacct
ggagcagcttgccctgccccaagagtcgtcaccactctaatgagtgcgcttgctaaacta
gcgtcaaggtcacatgacctcatccccagggtgtctctgtttctctctaagctaagaaca
gtaaccagaggggggtcagtggcctggtgttcagatgaggaagacctcattgccatagta
acgcgaggggaggagttgtggtcgctgctgaagacccctggtgtggcccagagtgtcctg
actccacctcagcatgtcaccacaccgcagtggcacagagacaccaacgtgtccatgcca
ctgcaactgcgaaccctcaccagcctcacacactcacagtga
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