Lates calcarifer (barramundi perch): 108877620
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Entry
108877620 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: syndetin
KO
K23288
syndetin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108877620
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Others
EARP complex
108877620
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Kgd4-YMR31
Motif
Other DBs
NCBI-GeneID:
108877620
NCBI-ProteinID:
XP_050922102
UniProt:
A0AAJ8AYT7
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Position
LG3:complement(9195861..9289748)
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AA seq
991 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESMADLSPVENLRIPSKEELRELREQPIDPQAEQEIIDSIEEV
YFSSDSFDMVQHELEKLPPELNLQELEEYRDKLKRQQAAVSKKVADLILEKQPAYVKELE
RVTALQTNLQLAAVICTNARRQLSVAKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVLHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITLDSYIPCLTDLCKALWEVMLSYHRTMQWHEEQDKQENTDDAAA
AESDELVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVISRLM
QVGEEFCGSKSEVLQESIKRQSINYFKNYHRARLEELRMFLENETWELCPVKSNFNIAQL
HEFKFMGQCRSPSVSPSKQAASSAATPTQEELSLFQQYVQEGNPFEMHIEHKEEETEDVL
ASNGYESDELEKSVYQDYDSDSDVPEELKQDYVDEQTGDAPLKSVSRETMRSKRKSDYNL
NKTNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDM
PVPSPSLPTHGGREAGPARVVGPACLYESSGLGLISSRLRTTLNRIQESLIDMEAVGENA
GVHGPAEDRKEKVPSPHLSQMVVLTNSGTLYGLAQRVVATESLVFLAEQFESLQSHLDTM
MPAAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLMMAGVKWDIREIMSQHN
VYVDVLLKEFEQFNKRLGDVSRHVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEG
RALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLA
NLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctctcatggcccggcagggcctgaaaagcccccaagagagcatg
gcagacctcagtcctgtggagaacctgaggatcccgagcaaggaggagttgcgggagctg
agggagcagcccatcgacccacaggcggagcaggagatcatcgacagcatcgaggaagtc
tacttctccagcgactcctttgacatggtgcagcatgaactggagaaactcccacctgag
ctgaacctgcaggagctggaggagtatagagacaaactgaagagacaacaggcagcagtt
tctaaaaaggtcgcagatctcattctggagaaacagcctgcttatgtcaaggaactggag
agagtgacagcgttacagactaacctgcagctggcagcagtcatttgcactaatgcaagg
agacaactgagcgtggcgaaggaaggcttcacagaggccagcctgggtctactggccaat
cagagaagacgacaactgctgacaggcttgctcaagtctctgaggaccatcaagacgctg
caaagaacagatgtaagactcagcgagatgcttgaggaggaagactacccaggtgcgatc
cagctctgtctggagtgtcagaaggctgccagcacctttaaacactacagctgcatcagt
gaattgaattccaaactacaagacactctggagcaaatagaggagcagcttgatgtcgcc
ctgtcgaagacttgtaagcactttgatgttttgcactacaccaaggtccagctggcctac
acgctcctaggcaagacacagactgctatggaccagctacacatgcacttcacccaggcc
atccacaacactgtgttccaagtggtgctgggatatgtggagttatgtgctggcaacgct
gacaccaagtttcagaagatgcagtacaaggatctgtgcacacatatcaccttggacagc
tatatcccctgcttgacggatctgtgcaaggcattgtgggaggtgatgctgagctaccac
cgcaccatgcagtggcacgaggagcaagacaaacaggagaacacagatgatgcggcagca
gcagagtctgacgagttggtggtggatcgcagctacgtgaagaagaaactggagcatggg
ctgacacgcatctggcaggatgtccagttgaaggtgaaggcctacattctggggacggac
atgtccaacttcaaatacgatgatttcatagtggtgctggatgtcatcagcaggttgatg
caggtgggtgaggagttctgcggtagcaagtcagaggtcctgcaggagtccatcaaacgg
cagagcatcaactacttcaaaaactatcacagggcacgactggaagagctgaggatgttt
ctggagaatgagacgtgggagctgtgtcctgtcaagtctaactttaacatcgcccagctc
catgagtttaagtttatgggccagtgtcgctctccgtccgtttccccgagcaaacaggcc
gcgtcatcggccgccaccccgacccaggaggagctgtctctgttccagcagtacgtccag
gagggaaacccgtttgagatgcacatcgagcacaaagaggaggagacagaggacgtgctg
gcatctaatgggtacgagtcagacgaactggagaagagtgtgtatcaggattacgacagt
gacagcgatgtcccagaggagctcaagcaggactacgtggacgagcagacgggtgacgcc
cctctgaagagcgtgtcccgggagaccatgagaagcaagagaaagtccgactacaacctt
aataaaactaatgcaccaatcctcaccaacaccaccctcaacgtcatccggcttgttgga
aagtacatgcagatgatgaacatcctgaagccgatcgcctttgatgtcatccactgcgtg
tcccagctctttgactactacctgtatgctgtatataccttctttggacgcaatgacatg
cctgtcccaagcccgtctttgcccactcatggtggcagagaggcgggccctgccagggtg
gtgggtcctgcttgcttgtatgagtcatcgggtctgggccttatcagcagcagactgaga
accacactgaaccggatccaggagagcctcattgacatggaggcagtaggggagaatgcg
ggagtccacggcccagcagaggacaggaaggagaaggtgcccagcccccatctcagccaa
atggtggtcctcactaacagcgggactctgtatgggctggcacagagggtggtggctact
gagtctcttgtgtttctggctgaacagtttgagtccctccagtcccacctggatacaatg
atgcctgcagccaagaagcctttcctgcaacagttttattcccagacggtgtctacagcc
agtgaactgcggaaaccaatatactggattgtggcagccaaggccatcgactacgagcaa
atgttactcatgatggccggagttaaatgggacattagggagataatgtcacagcacaat
gtatatgtggacgtcctgttaaaggagtttgagcaatttaacaagcggctgggtgatgtt
tccagacatgtgcgcatcccactgcctgtgtccaacgtcctgtgggagcactgcatccgt
ctggccaacaggactcttgtcgagggctatgctaatgtgaagaaatgtagcaacgagggc
cgggccctgatgcagctggacttccaacagttcctcatgaagctggagaagctaaccgac
ctgcgacccatccccgacaaagagtttgttgagacctacatcaaggcttattacctgaca
gagaacgatatggagcagtttatcaagaatcacagggagtactccatgaagcagctagcc
aacttggtgaacgtttgcctgggctcacatataaacaagaaggctcgtcagaaacttctg
gcagccatcgatgacattgacagacccaagagatag
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