Lates calcarifer (barramundi perch): 108877639
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Entry
108877639 CDS
T04895
Name
(RefSeq) sterol regulatory element-binding protein 2
KO
K09107
sterol regulatory element-binding transcription factor 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108877639
04131 Membrane trafficking [BR:
lcf04131
]
108877639
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
Ubiquitous bHLH-ZIP factors
108877639
Membrane trafficking [BR:
lcf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
108877639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
108877639
NCBI-ProteinID:
XP_018523258
UniProt:
A0A4W6DNR2
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Position
LG11:16997317..17013433
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AA seq
1178 aa
AA seq
DB search
MDGGEYIETMDSTLAELGDEFTLGDIDEMLQFVSNQVGDFPDLFEDQMTSAGSLQSGGAS
VTPRLAIQTPQNPQTPQTPIPVTYQSSSVSLTASQTLSPQSVPLTPPLTPAQTPSPTTTS
SGQQQVTRSPPLLQPRPQVVQPIQPQPQQTAQPAIQMHTQGIPMQTQSFPVHTLVQTHCQ
TPLPIQTQAPQTVMITSNGGQSRFIQNPVICHQSPAPGFQVLQPQVQSIVTSPQLQPVTI
QHQRVLTPTGQTIQTLSTAPTTVHTVQQQVQQVPVLVQQPQILKTDSLVLTTLKPDGTQV
LSTMQSPTGITTLTTPIQNTALQVPTLMSSNILTTVPVMMGGGDKLPIKQLQPGSTHSTN
GARSNVEQGQVMTGGVGPGGVVKEGERRTTHNIIEKRYRSSINDKIIELRDLVMGNDAKM
HKSGVLRKAIDYIKYLQQVNHKLRQENLALKMANQKNKPVTLSEDVELKQEIVMMSPPAS
DSGSGSPHQFSPYCVDSEPGSPLLDHDQVKSEPDSPSSVGVMDRSRLLLCALTFFCLSLN
PLPSLLGSEDSGSHTLSTGHGPSRTLVWFPSHTQDFASWLRCLLPWVMVWVLSGVGAVWG
CVRVLYLWEPVTPLHSPKSVSFWRHRKQADLHLNRGDYTAAMASLETCLSVLTRALPSTN
LDLVCSLSWNVIRYCLHRPTPLGWLVHQVRGKHEGEEARTSARDAALVYHRLSQLQLTGK
LPQRSSLWALSLSLSAVNLSESAQGKMAPAQHSQIYVTAATALRTVLGHHLSCLPGYLLS
CAESVASQSETKPIPDCLRWLFTPLGRQFFLSCDWSVKSESSDGVYTSQRDPADPIAQLH
RCFCRKLLERAVHTLIQPQSDSEAGKRNDNTGEFSSALEFLQLLNSCTEDSPSSPPLFST
PPNHTTTPVGDPVSRWWAVVLKAAVHWLQGDDAAVRSLLAEAERMPRALHTLDHPLPKAV
LLLCKAVQMSLSPLKGEGAVACLSHCDRASSYLRPSISVPLTQSGNWLNKGVELLVCDLL
LTLRTSLWQRGGSSNGEPGPAPGSQLAGFQRDLSALRKLTQCYRQAQHKVFLHETTVRLM
AGASPTRTHQLLEHNLRRRTHSSYTAEGECVLGERERAHAILLACRHLPMPLLTPPGHRA
RLLAEAKRTLERVGDRRSLQDCQQILLRLSGGTTIAAS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggacggcggagaatacatagagaccatggactcgactctagcggaattaggggacgaa
ttcaccctgggagacatcgacgagatgctgcagtttgtcagcaaccaagtgggggacttc
ccagacttgtttgaggaccagatgacctcagcaggctcactacagagcggtggcgccagt
gttaccccacgtcttgccattcaaacccctcaaaacccccagactccccagacaccaatc
cctgtcacctaccagagctccagcgtaagcctcaccgcctcccagacactgtcgccccag
tcagtacccctcacccctcccctcactcctgcccagactccatcccccaccaccacctcc
tcagggcagcagcaggtgacccgcagccctccgctccttcagccacggcctcaggtggtc
cagcccatccagcctcagccccaacagacagcccagcctgccatccagatgcacacccag
ggaatccctatgcagacccagagctttccggtccacaccctggttcagacccactgccag
acacccttgcccatccagacccaggctccccaaactgtgatgattacctccaatggtggg
cagtcacgtttcatccagaaccctgtcatctgccaccagagccctgctcctggtttccaa
gtcctccagccacaggtgcagagcattgtgacatcaccacagctccagccagtgaccatt
cagcatcaacgcgttctgactccaacaggtcaaaccatacagactctctctacagcgccg
accacagtccacactgtgcagcagcaggtgcagcaggtgcctgttctggtccagcagcct
cagattctgaagacagattcactggttctcacaacactcaaaccagatggcacacaggtg
ctgtctaccatgcagagccccacagggatcaccaccttgaccacgcccatccaaaacaca
gctctgcaagtcccgacgctgatgagcagtaacatcctgaccaccgtccccgtcatgatg
ggaggaggagacaagctgccgatcaagcagctacagccaggctccacccactctacaaat
ggagccaggtcaaatgtagagcagggccaggtgatgacaggaggagtaggcccaggagga
gtggtgaaagagggagagaggaggacaacccacaacatcatcgagaagagatatcggtcc
tccatcaacgacaaaatcatcgagcttagagacctggtcatgggcaatgacgcaaagatg
cataaatctggggtgctgaggaaggccattgactacatcaaatacctgcaacaggtcaac
cacaaactacgacaggagaacctggcccttaaaatggcaaaccagaagaacaagccggtg
acactatctgaagatgtggagctcaaacaggaaatagtgatgatgtcacccccagcctcg
gactctggttcaggttccccccaccagttctctccttactgtgttgactcagagccaggc
agccccttactggatcacgatcaggtgaagagtgagccagattctccctcctctgttgga
gtgatggatcgttctcgactgcttctctgcgccctgacctttttctgcctgtccttaaac
ccactgccctctcttctgggctctgaagactcaggaagccacaccctatccacgggccat
gggccatctaggacgcttgtctggttcccaagccacacgcaggactttgcatcctggctg
cggtgtctgttgccatgggtgatggtgtgggtgctgagcggggtgggtgcagtgtggggt
tgtgttagggtgctctacctgtgggagcctgtcacgccccttcactccccaaaatctgtg
tctttctggaggcatcgcaaacaagctgacctgcatctcaacaggggagattacacagca
gcaatggctagtttagagacctgcttgtccgtcttgactagagctctcccctcaaccaat
ctggacctggtttgctcactgtcctggaacgtgattcgctactgcttgcatcgtccaact
cctctgggttggctggttcaccaggtcagaggaaagcacgagggagaggaggcgaggact
agcgcaagagacgcagctctggtttaccaccggctgagccagctgcagctcacaggaaag
ctgcctcagcgtagcagcctgtgggctttgtctctctctctcagcgctgtcaacctcagc
gagagcgcccaaggcaagatggcccctgcccagcacagccagatctatgtcactgcagca
acagccctgcgcaccgtgctgggccaccacctctcctgtttgcctggttacttgttgagc
tgtgcagagtctgtagccagccaatcagagactaagcccatccctgactgcctgcgctgg
ctcttcaccccattgggcagacagttcttcctgagttgtgattggtcagtgaagtcagag
agcagcgatggtgtgtacacttctcagagagacccagctgatcccattgcccagctgcac
cgctgtttctgcaggaagcttttggagagagctgttcacaccctcatccagccacagagc
gactctgaagcaggcaaacgcaacgacaacactggggagttttccagtgccctggagttc
ctccagttactgaacagctgtacagaggactctccctcctctcctcctctcttctcaact
cctcccaatcacaccaccactccagtgggagacccagtgagtcgttggtgggctgtggtc
ctgaaggctgccgtgcactggctgcagggtgatgatgccgcagtgaggtcactgttggca
gaggcagagcgaatgccgagggctctacacactcttgaccaccctcttcccaaggctgtg
ctgctgctttgtaaagcggttcagatgagtctgtcgcctctgaagggggaaggagcagta
gcctgcctgtcccactgtgacagagccagcagctacctgcgccccagcatctcagtaccg
ctcacccagtctgggaactggctgaacaagggggtggagctcctggtgtgtgaccttctg
ctgactttgaggaccagtttgtggcagcggggaggcagcagtaacggagagcctggcccg
gcccctggatcacagttggctggtttccagagggacctcagcgcgctcagaaagctcaca
cagtgctacagacaggctcaacacaaggtgtttcttcatgagaccacagtgaggctgatg
gctggagccagtcccacgaggactcaccagctgctggagcacaacctccgacgcaggaca
cacagctcttacacagccgaaggtgagtgtgtcctgggcgagagagagagggctcatgcc
atcctgctggcctgccgccacctgcccatgccccttcttaccccacctgggcaccgtgcc
cgcctgctagctgaggccaagcgcaccctggagcgggtgggagaccgccggtccctgcag
gactgtcagcagatcttgctgcgcctcagtgggggcacgaccatcgcagcctcctga
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