Lates calcarifer (barramundi perch): 108877640
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Entry
108877640 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SMURF1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04137
Mitophagy - animal
lcf04144
Endocytosis
lcf04340
Hedgehog signaling pathway
lcf04350
TGF-beta signaling pathway
lcf04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108877640
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
108877640
04350 TGF-beta signaling pathway
108877640
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108877640
04137 Mitophagy - animal
108877640
09144 Cellular community - eukaryotes
04520 Adherens junction
108877640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108877640
04121 Ubiquitin system [BR:
lcf04121
]
108877640
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108877640
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108877640
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
108877640
Autophagy
Mitophagy
Other mitophagy associated proteins
108877640
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
HECT type E3
108877640
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
108877640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
108877640
NCBI-ProteinID:
XP_018523259
LinkDB
All DBs
Position
LG11:16303633..16318627
Genome browser
AA seq
733 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVFEGCFSEEPLPYSDSTGA
AGGGNCRLDSPSQESRLQTQRIRGQDSRGHGHTPQNRPHGHQPPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPVGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQQSQAKESSQAPQMDVGGEEGGGGGVGGGGGGGGGGGDGDMAARYERDLVHK
LKLLRHELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYG
GVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGLAVF
HGHYINGSFTLPFYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHTFCVEHNA
FGKFLQHELKPNGRNIPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFSELIPQHLLK
PFDHKELELIIGGLGKIDLADWKTNTRLKHCTSESNVVRWFWQAVEAFSEERRGRLLQFV
TGSTRVPLQGFKALQGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDIPPYESYEKLYEKL
LTAVEETCGFAVE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggactaggaggaacgggtccagcatcaaaatccgactgacagtatta
tgtgccaagaacctcgcaaagaaagacttctttcgcctgccagatccatttgccaaagtt
gtggtggacggatcaggtcaatgccactcgacagacacagtcaagagcacactggacccc
aaatggaatcagcactacgacctctacattggaaagacagactccatcactatcagtata
tggaaccacaaaaagatccataaacgacagggggcgggcttcctgggctgcatacgactt
ttatctaatgctatcagcaggctaaaagacacaggataccagcgtttagatctatgtaag
ctcaacccctcggacagcgacgcagtacgggggcagatcgtagtgagcttacagacaaga
gaccgcatcggcagcggaggccctgtggtggactgcagaggactgttggaaaatgatggg
cctgtgtttgagggatgtttcagtgaagagccgctgccctactccgactccactggcgca
gcggggggagggaactgccggctcgactcgcccagtcaggagagccgtcttcagacccag
cgaatcagagggcaggactccagaggccacggacacaccccccagaacagacctcacggg
caccagccacctgacctaccagagggatacgagcagcgaacaacagttcagggccaggtg
tacttccttcacacgcagacaggcgtcagcacctggcacgaccctcggataccgcgggac
ctggccagcgtgagctgcgaggagctcggtccgttgccagtgggctgggaggtccgaagc
accgtgtctggacggatctactttgtggaccacaacaaccgaaccacacagttcacagac
ccacgcctacacaccattatcagccagcaatcccaagcaaaggagtcctcccaagccccc
cagatggatgtggggggtgaggaggggggaggtggaggagtgggcggcggcggtgggggc
ggtggaggaggaggagacggagacatggcggcacgctacgagagagacttggtccataag
ttgaagctgctcaggcacgagctgtccttgcagcagcctcaagcaggacactgtcgcatc
gaggtgtcccgagaggagatctttgaggaatcgtatcggcagattatgaagatgaggccc
aaagacctgaagaagcgtctgatggtgaagttcaggggagaggagggcctggactacggt
ggagtggccagagagtggctgtacctgctgtgtcatgaaatgttgaacccctattacggc
ctgttccagtactccacagacaatatctacacactacagatcaaccccgactcttccatc
aaccctgaccacctgtcatatttccactttgtgggtcgagtgatgggcctcgcagttttc
cacggtcactacatcaatgggagcttcacgctgcccttctacaaacagctgctaggcaaa
cccatccagctcaacgacctggagaccaccgacccggagttgcacaagagcctcgtctgg
atactagagaacgacatcacttcagtcctcgaccacacgttctgcgtggagcacaatgcc
tttgggaagtttttacaacatgaactcaaacctaatgggcgaaatatccctgttactgag
gagaacaagaaagaatatgtgagactttatgtgaactggaggtttatgcgaggaattgaa
gcccagtttctggctctacagaagggattcagtgagctcatcccacagcacctcctcaaa
ccttttgaccataaagaacttgagttgatcatcggcggcctggggaagatcgacctcgca
gactggaagacgaacacccgcctgaagcactgcacaagtgaaagcaacgtggtgcggtgg
ttctggcaggcagtggaggctttcagcgaggagaggagaggacgtctgctgcagtttgtc
acaggctccaccagggtcccgctacagggtttcaaagcgctgcagggttctgcaggacca
aggctctttaccatccatttgatagacgccaacacagacaacctgcccaaggctcacaca
tgttttaacaggatagacatcccaccctacgagtcttacgagaaactttacgagaaactg
ctgacggctgtggaggagacctgcggcttcgctgtggagtga
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